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NRN1 (neuritin 1)

Identity

Alias (NCBI)NRN
dJ380B8.2
HGNC (Hugo) NRN1
HGNC Alias symbNRN
LocusID (NCBI) 51299
Atlas_Id 41581
Location 6p25.1  [Link to chromosome band 6p25]
Location_base_pair Starts at 5998000 and ends at 6006925 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NRN1 (6p25.1) / GNG7 (19p13.3)NRN1 (6p25.1) / THBS3 (1q22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;19)(p25;p13) NRN1/GNG7


External links

 

Nomenclature
HGNC (Hugo)NRN1   17972
Cards
Entrez_Gene (NCBI)NRN1    neuritin 1
AliasesNRN; dJ380B8.2
GeneCards (Weizmann)NRN1
Ensembl hg19 (Hinxton)ENSG00000124785 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124785 [Gene_View]  ENSG00000124785 [Sequence]  chr6:5998000-6006925 [Contig_View]  NRN1 [Vega]
ICGC DataPortalENSG00000124785
TCGA cBioPortalNRN1
AceView (NCBI)NRN1
Genatlas (Paris)NRN1
SOURCE (Princeton)NRN1
Genetics Home Reference (NIH)NRN1
Genomic and cartography
GoldenPath hg38 (UCSC)NRN1  -     chr6:5998000-6006925 -  6p25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NRN1  -     6p25.1   [Description]    (hg19-Feb_2009)
GoldenPathNRN1 - 6p25.1 [CytoView hg19]  NRN1 - 6p25.1 [CytoView hg38]
ImmunoBaseENSG00000124785
Genome Data Viewer NCBINRN1 [Mapview hg19]  
OMIM607409   
Gene and transcription
Genbank (Entrez)AF114833 AF136631 AJ420483 AK093824 AK314095
RefSeq transcript (Entrez)NM_001278710 NM_001278711 NM_016588
Consensus coding sequences : CCDS (NCBI)NRN1
Gene ExpressionNRN1 [ NCBI-GEO ]   NRN1 [ EBI - ARRAY_EXPRESS ]   NRN1 [ SEEK ]   NRN1 [ MEM ]
Gene Expression Viewer (FireBrowse)NRN1 [ Firebrowse - Broad ]
GenevisibleExpression of NRN1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51299
GTEX Portal (Tissue expression)NRN1
Human Protein AtlasENSG00000124785-NRN1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPD7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NPD7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPD7
PhosPhoSitePlusQ9NPD7
Domains : Interpro (EBI)Neuritin_fam   
Domain families : Pfam (Sanger)NRN1 (PF15056)   
Domain families : Pfam (NCBI)pfam15056   
Conserved Domain (NCBI)NRN1
SuperfamilyQ9NPD7
AlphaFold pdb e-kbQ9NPD7   
Human Protein Atlas [tissue]ENSG00000124785-NRN1 [tissue]
HPRD07592
Protein Interaction databases
DIP (DOE-UCLA)Q9NPD7
IntAct (EBI)Q9NPD7
BioGRIDNRN1
STRING (EMBL)NRN1
ZODIACNRN1
Ontologies - Pathways
QuickGOQ9NPD7
Ontology : AmiGOextracellular region  plasma membrane  nervous system development  anchored component of membrane  synapse  
Ontology : EGO-EBIextracellular region  plasma membrane  nervous system development  anchored component of membrane  synapse  
NDEx NetworkNRN1
Atlas of Cancer Signalling NetworkNRN1
Wikipedia pathwaysNRN1
Orthology - Evolution
OrthoDB51299
GeneTree (enSembl)ENSG00000124785
Phylogenetic Trees/Animal Genes : TreeFamNRN1
Homologs : HomoloGeneNRN1
Homology/Alignments : Family Browser (UCSC)NRN1
Gene fusions - Rearrangements
Fusion : MitelmanNRN1/GNG7 [6p25.1/19p13.3]  
Fusion : QuiverNRN1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNRN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NRN1
dbVarNRN1
ClinVarNRN1
MonarchNRN1
1000_GenomesNRN1 
Exome Variant ServerNRN1
GNOMAD BrowserENSG00000124785
Varsome BrowserNRN1
ACMGNRN1 variants
VarityQ9NPD7
Genomic Variants (DGV)NRN1 [DGVbeta]
DECIPHERNRN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNRN1 
Mutations
ICGC Data PortalNRN1 
TCGA Data PortalNRN1 
Broad Tumor PortalNRN1
OASIS PortalNRN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNRN1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNRN1
Mutations and Diseases : HGMDNRN1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaNRN1
DgiDB (Drug Gene Interaction Database)NRN1
DoCM (Curated mutations)NRN1
CIViC (Clinical Interpretations of Variants in Cancer)NRN1
Cancer3DNRN1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607409   
Orphanet
DisGeNETNRN1
MedgenNRN1
Genetic Testing Registry NRN1
NextProtQ9NPD7 [Medical]
GENETestsNRN1
Target ValidationNRN1
Huge Navigator NRN1 [HugePedia]
ClinGenNRN1
Clinical trials, drugs, therapy
MyCancerGenomeNRN1
Protein Interactions : CTDNRN1
Pharm GKB GenePA38477
PharosQ9NPD7
Clinical trialNRN1
Miscellaneous
canSAR (ICR)NRN1
HarmonizomeNRN1
DataMed IndexNRN1
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNRN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:23:19 CEST 2021

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