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NRN1 (neuritin 1)

Identity

Alias_symbol (synonym)NRN
Other aliasdJ380B8.2
HGNC (Hugo) NRN1
LocusID (NCBI) 51299
Atlas_Id 41581
Location 6p25.1  [Link to chromosome band 6p25]
Location_base_pair Starts at 5998000 and ends at 6007400 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NRN1 (6p25.1) / GNG7 (19p13.3)NRN1 (6p25.1) / THBS3 (1q22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;19)(p25;p13) NRN1/GNG7


External links

Nomenclature
HGNC (Hugo)NRN1   17972
Cards
Entrez_Gene (NCBI)NRN1  51299  neuritin 1
AliasesNRN; dJ380B8.2
GeneCards (Weizmann)NRN1
Ensembl hg19 (Hinxton)ENSG00000124785 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124785 [Gene_View]  ENSG00000124785 [Sequence]  chr6:5998000-6007400 [Contig_View]  NRN1 [Vega]
ICGC DataPortalENSG00000124785
TCGA cBioPortalNRN1
AceView (NCBI)NRN1
Genatlas (Paris)NRN1
WikiGenes51299
SOURCE (Princeton)NRN1
Genetics Home Reference (NIH)NRN1
Genomic and cartography
GoldenPath hg38 (UCSC)NRN1  -     chr6:5998000-6007400 -  6p25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NRN1  -     6p25.1   [Description]    (hg19-Feb_2009)
EnsemblNRN1 - 6p25.1 [CytoView hg19]  NRN1 - 6p25.1 [CytoView hg38]
Mapping of homologs : NCBINRN1 [Mapview hg19]  NRN1 [Mapview hg38]
OMIM607409   
Gene and transcription
Genbank (Entrez)AF114833 AF136631 AJ420483 AK093824 AK314095
RefSeq transcript (Entrez)NM_001278710 NM_001278711 NM_016588
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NRN1
Cluster EST : UnigeneHs.103291 [ NCBI ]
CGAP (NCI)Hs.103291
Alternative Splicing GalleryENSG00000124785
Gene ExpressionNRN1 [ NCBI-GEO ]   NRN1 [ EBI - ARRAY_EXPRESS ]   NRN1 [ SEEK ]   NRN1 [ MEM ]
Gene Expression Viewer (FireBrowse)NRN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51299
GTEX Portal (Tissue expression)NRN1
Human Protein AtlasENSG00000124785-NRN1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPD7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NPD7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPD7
Splice isoforms : SwissVarQ9NPD7
PhosPhoSitePlusQ9NPD7
Domains : Interpro (EBI)Neuritin_fam   
Domain families : Pfam (Sanger)NRN1 (PF15056)   
Domain families : Pfam (NCBI)pfam15056   
Conserved Domain (NCBI)NRN1
DMDM Disease mutations51299
Blocks (Seattle)NRN1
SuperfamilyQ9NPD7
Human Protein Atlas [tissue]ENSG00000124785-NRN1 [tissue]
Peptide AtlasQ9NPD7
HPRD07592
IPIIPI00470625   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPD7
IntAct (EBI)Q9NPD7
FunCoupENSG00000124785
BioGRIDNRN1
STRING (EMBL)NRN1
ZODIACNRN1
Ontologies - Pathways
QuickGOQ9NPD7
Ontology : AmiGOextracellular region  plasma membrane  nervous system development  cell junction  anchored component of membrane  synapse  
Ontology : EGO-EBIextracellular region  plasma membrane  nervous system development  cell junction  anchored component of membrane  synapse  
NDEx NetworkNRN1
Atlas of Cancer Signalling NetworkNRN1
Wikipedia pathwaysNRN1
Orthology - Evolution
OrthoDB51299
GeneTree (enSembl)ENSG00000124785
Phylogenetic Trees/Animal Genes : TreeFamNRN1
HOVERGENQ9NPD7
HOGENOMQ9NPD7
Homologs : HomoloGeneNRN1
Homology/Alignments : Family Browser (UCSC)NRN1
Gene fusions - Rearrangements
Fusion : MitelmanNRN1/GNG7 [6p25.1/19p13.3]  
Fusion : QuiverNRN1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNRN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NRN1
dbVarNRN1
ClinVarNRN1
1000_GenomesNRN1 
Exome Variant ServerNRN1
ExAC (Exome Aggregation Consortium)ENSG00000124785
GNOMAD BrowserENSG00000124785
Varsome BrowserNRN1
Genetic variants : HAPMAP51299
Genomic Variants (DGV)NRN1 [DGVbeta]
DECIPHERNRN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNRN1 
Mutations
ICGC Data PortalNRN1 
TCGA Data PortalNRN1 
Broad Tumor PortalNRN1
OASIS PortalNRN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNRN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNRN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NRN1
DgiDB (Drug Gene Interaction Database)NRN1
DoCM (Curated mutations)NRN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NRN1 (select a term)
intoGenNRN1
Cancer3DNRN1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607409   
Orphanet
DisGeNETNRN1
MedgenNRN1
Genetic Testing Registry NRN1
NextProtQ9NPD7 [Medical]
TSGene51299
GENETestsNRN1
Target ValidationNRN1
Huge Navigator NRN1 [HugePedia]
snp3D : Map Gene to Disease51299
BioCentury BCIQNRN1
ClinGenNRN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51299
Chemical/Pharm GKB GenePA38477
Clinical trialNRN1
Miscellaneous
canSAR (ICR)NRN1 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNRN1
EVEXNRN1
GoPubMedNRN1
iHOPNRN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:27:01 CET 2018

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