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NRROS (negative regulator of reactive oxygen species)

Identity

Alias_namesLRRC33
leucine rich repeat containing 33
Alias_symbol (synonym)UNQ3030
ELLP3030
MGC50789
GARPL1
Other alias
HGNC (Hugo) NRROS
LocusID (NCBI) 375387
Atlas_Id 70976
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 196639696 and ends at 196662003 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NRROS (3q29) / CST7 (20p11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NRROS   24613
Cards
Entrez_Gene (NCBI)NRROS  375387  negative regulator of reactive oxygen species
AliasesELLP3030; GARPL1; LRRC33; UNQ3030
GeneCards (Weizmann)NRROS
Ensembl hg19 (Hinxton)ENSG00000174004 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174004 [Gene_View]  chr3:196639696-196662003 [Contig_View]  NRROS [Vega]
ICGC DataPortalENSG00000174004
TCGA cBioPortalNRROS
AceView (NCBI)NRROS
Genatlas (Paris)NRROS
WikiGenes375387
SOURCE (Princeton)NRROS
Genetics Home Reference (NIH)NRROS
Genomic and cartography
GoldenPath hg38 (UCSC)NRROS  -     chr3:196639696-196662003 +  3q29   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NRROS  -     3q29   [Description]    (hg19-Feb_2009)
EnsemblNRROS - 3q29 [CytoView hg19]  NRROS - 3q29 [CytoView hg38]
Mapping of homologs : NCBINRROS [Mapview hg19]  NRROS [Mapview hg38]
OMIM615322   
Gene and transcription
Genbank (Entrez)AA534416 AY358322 BC034704 BC044233 BQ070837
RefSeq transcript (Entrez)NM_198565
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NRROS
Cluster EST : UnigeneHs.702186 [ NCBI ]
CGAP (NCI)Hs.702186
Alternative Splicing GalleryENSG00000174004
Gene ExpressionNRROS [ NCBI-GEO ]   NRROS [ EBI - ARRAY_EXPRESS ]   NRROS [ SEEK ]   NRROS [ MEM ]
Gene Expression Viewer (FireBrowse)NRROS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)375387
GTEX Portal (Tissue expression)NRROS
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YC3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86YC3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86YC3
Splice isoforms : SwissVarQ86YC3
PhosPhoSitePlusQ86YC3
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)LRR_1 (PF00560)    LRR_6 (PF13516)    LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam00560    pfam13516    pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  
Conserved Domain (NCBI)NRROS
DMDM Disease mutations375387
Blocks (Seattle)NRROS
SuperfamilyQ86YC3
Human Protein AtlasENSG00000174004
Peptide AtlasQ86YC3
HPRD17452
IPIIPI00329367   
Protein Interaction databases
DIP (DOE-UCLA)Q86YC3
IntAct (EBI)Q86YC3
FunCoupENSG00000174004
BioGRIDNRROS
STRING (EMBL)NRROS
ZODIACNRROS
Ontologies - Pathways
QuickGOQ86YC3
Ontology : AmiGOendoplasmic reticulum  endoplasmic reticulum membrane  plasma membrane  superoxide metabolic process  inflammatory response  immune response  immune response  integral component of membrane  innate immune response  
Ontology : EGO-EBIendoplasmic reticulum  endoplasmic reticulum membrane  plasma membrane  superoxide metabolic process  inflammatory response  immune response  immune response  integral component of membrane  innate immune response  
NDEx NetworkNRROS
Atlas of Cancer Signalling NetworkNRROS
Wikipedia pathwaysNRROS
Orthology - Evolution
OrthoDB375387
GeneTree (enSembl)ENSG00000174004
Phylogenetic Trees/Animal Genes : TreeFamNRROS
HOVERGENQ86YC3
HOGENOMQ86YC3
Homologs : HomoloGeneNRROS
Homology/Alignments : Family Browser (UCSC)NRROS
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNRROS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NRROS
dbVarNRROS
ClinVarNRROS
1000_GenomesNRROS 
Exome Variant ServerNRROS
ExAC (Exome Aggregation Consortium)NRROS (select the gene name)
Genetic variants : HAPMAP375387
Genomic Variants (DGV)NRROS [DGVbeta]
DECIPHERNRROS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNRROS 
Mutations
ICGC Data PortalNRROS 
TCGA Data PortalNRROS 
Broad Tumor PortalNRROS
OASIS PortalNRROS [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNRROS
BioMutasearch NRROS
DgiDB (Drug Gene Interaction Database)NRROS
DoCM (Curated mutations)NRROS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NRROS (select a term)
intoGenNRROS
Cancer3DNRROS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615322   
Orphanet
MedgenNRROS
Genetic Testing Registry NRROS
NextProtQ86YC3 [Medical]
TSGene375387
GENETestsNRROS
Huge Navigator NRROS [HugePedia]
snp3D : Map Gene to Disease375387
BioCentury BCIQNRROS
ClinGenNRROS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD375387
Chemical/Pharm GKB GenePA142671521
Clinical trialNRROS
Miscellaneous
canSAR (ICR)NRROS (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNRROS
EVEXNRROS
GoPubMedNRROS
iHOPNRROS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:45:26 CEST 2017

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