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NRSN2 (neurensin 2)

Identity

Alias_namesC20orf98
chromosome 20 open reading frame 98
Alias_symbol (synonym)dJ1103G7.6
Other alias
HGNC (Hugo) NRSN2
LocusID (NCBI) 80023
Atlas_Id 50216
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 346726 and ends at 354868 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HNRNPUL2 (11q12.3) / NRSN2 (20p13)NRSN2 (20p13) / CCDC88C (14q32.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NRSN2   16229
Cards
Entrez_Gene (NCBI)NRSN2  80023  neurensin 2
AliasesC20orf98; dJ1103G7.6
GeneCards (Weizmann)NRSN2
Ensembl hg19 (Hinxton)ENSG00000125841 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125841 [Gene_View]  chr20:346726-354868 [Contig_View]  NRSN2 [Vega]
ICGC DataPortalENSG00000125841
TCGA cBioPortalNRSN2
AceView (NCBI)NRSN2
Genatlas (Paris)NRSN2
WikiGenes80023
SOURCE (Princeton)NRSN2
Genetics Home Reference (NIH)NRSN2
Genomic and cartography
GoldenPath hg38 (UCSC)NRSN2  -     chr20:346726-354868 +  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NRSN2  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblNRSN2 - 20p13 [CytoView hg19]  NRSN2 - 20p13 [CytoView hg38]
Mapping of homologs : NCBINRSN2 [Mapview hg19]  NRSN2 [Mapview hg38]
OMIM610666   
Gene and transcription
Genbank (Entrez)AK026982 AK290527 AL136915 AM393375 AW292804
RefSeq transcript (Entrez)NM_001323679 NM_001323680 NM_001323681 NM_001323682 NM_001323683 NM_001323684 NM_001323685 NM_024958
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NRSN2
Cluster EST : UnigeneHs.416024 [ NCBI ]
CGAP (NCI)Hs.416024
Alternative Splicing GalleryENSG00000125841
Gene ExpressionNRSN2 [ NCBI-GEO ]   NRSN2 [ EBI - ARRAY_EXPRESS ]   NRSN2 [ SEEK ]   NRSN2 [ MEM ]
Gene Expression Viewer (FireBrowse)NRSN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80023
GTEX Portal (Tissue expression)NRSN2
Human Protein AtlasENSG00000125841-NRSN2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZP1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZP1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZP1
Splice isoforms : SwissVarQ9GZP1
PhosPhoSitePlusQ9GZP1
Domains : Interpro (EBI)Neurensin    Nrsn2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NRSN2
DMDM Disease mutations80023
Blocks (Seattle)NRSN2
SuperfamilyQ9GZP1
Human Protein Atlas [tissue]ENSG00000125841-NRSN2 [tissue]
Peptide AtlasQ9GZP1
HPRD12791
IPIIPI00017231   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZP1
IntAct (EBI)Q9GZP1
FunCoupENSG00000125841
BioGRIDNRSN2
STRING (EMBL)NRSN2
ZODIACNRSN2
Ontologies - Pathways
QuickGOQ9GZP1
Ontology : AmiGOmolecular_function  plasma membrane  biological_process  integral component of membrane  transport vesicle  neuronal cell body  
Ontology : EGO-EBImolecular_function  plasma membrane  biological_process  integral component of membrane  transport vesicle  neuronal cell body  
NDEx NetworkNRSN2
Atlas of Cancer Signalling NetworkNRSN2
Wikipedia pathwaysNRSN2
Orthology - Evolution
OrthoDB80023
GeneTree (enSembl)ENSG00000125841
Phylogenetic Trees/Animal Genes : TreeFamNRSN2
HOVERGENQ9GZP1
HOGENOMQ9GZP1
Homologs : HomoloGeneNRSN2
Homology/Alignments : Family Browser (UCSC)NRSN2
Gene fusions - Rearrangements
Fusion: Tumor Portal NRSN2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNRSN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NRSN2
dbVarNRSN2
ClinVarNRSN2
1000_GenomesNRSN2 
Exome Variant ServerNRSN2
ExAC (Exome Aggregation Consortium)ENSG00000125841
GNOMAD BrowserENSG00000125841
Genetic variants : HAPMAP80023
Genomic Variants (DGV)NRSN2 [DGVbeta]
DECIPHERNRSN2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNRSN2 
Mutations
ICGC Data PortalNRSN2 
TCGA Data PortalNRSN2 
Broad Tumor PortalNRSN2
OASIS PortalNRSN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNRSN2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNRSN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NRSN2
DgiDB (Drug Gene Interaction Database)NRSN2
DoCM (Curated mutations)NRSN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NRSN2 (select a term)
intoGenNRSN2
Cancer3DNRSN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610666   
Orphanet
MedgenNRSN2
Genetic Testing Registry NRSN2
NextProtQ9GZP1 [Medical]
TSGene80023
GENETestsNRSN2
Target ValidationNRSN2
Huge Navigator NRSN2 [HugePedia]
snp3D : Map Gene to Disease80023
BioCentury BCIQNRSN2
ClinGenNRSN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80023
Chemical/Pharm GKB GenePA25805
Clinical trialNRSN2
Miscellaneous
canSAR (ICR)NRSN2 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNRSN2
EVEXNRSN2
GoPubMedNRSN2
iHOPNRSN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 13:03:12 CET 2017

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