Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NRTN (neurturin)

Identity

Other namesNTN
HGNC (Hugo) NRTN
LocusID (NCBI) 4902
Atlas_Id 43618
Location 19p13.3
Location_base_pair Starts at 5823818 and ends at 5828335 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NRTN   8007
Cards
Entrez_Gene (NCBI)NRTN  4902  neurturin
GeneCards (Weizmann)NRTN
Ensembl hg19 (Hinxton)ENSG00000171119 [Gene_View]  chr19:5823818-5828335 [Contig_View]  NRTN [Vega]
Ensembl hg38 (Hinxton)ENSG00000171119 [Gene_View]  chr19:5823818-5828335 [Contig_View]  NRTN [Vega]
ICGC DataPortalENSG00000171119
TCGA cBioPortalNRTN
AceView (NCBI)NRTN
Genatlas (Paris)NRTN
WikiGenes4902
SOURCE (Princeton)NRTN
Genomic and cartography
GoldenPath hg19 (UCSC)NRTN  -     chr19:5823818-5828335 +  19p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NRTN  -     19p13.3   [Description]    (hg38-Dec_2013)
EnsemblNRTN - 19p13.3 [CytoView hg19]  NRTN - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBINRTN [Mapview hg19]  NRTN [Mapview hg38]
OMIM602018   
Gene and transcription
Genbank (Entrez)AL161995 BC137399 BC137400 U78110
RefSeq transcript (Entrez)NM_004558
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_008202 NT_011295 NW_004929412
Consensus coding sequences : CCDS (NCBI)NRTN
Cluster EST : UnigeneHs.234775 [ NCBI ]
CGAP (NCI)Hs.234775
Alternative Splicing : Fast-db (Paris)GSHG0014499
Alternative Splicing GalleryENSG00000171119
Gene ExpressionNRTN [ NCBI-GEO ]   NRTN [ EBI - ARRAY_EXPRESS ]   NRTN [ SEEK ]   NRTN [ MEM ]
Gene Expression Viewer (FireBrowse)NRTN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)4902
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99748 (Uniprot)
NextProtQ99748  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99748
Splice isoforms : SwissVarQ99748 (Swissvar)
PhosPhoSitePlusQ99748
Domaine pattern : Prosite (Expaxy)TGF_BETA_2 (PS51362)   
Domains : Interpro (EBI)Cystine-knot_cytokine    TGF-b_C   
Domain families : Pfam (Sanger)TGF_beta (PF00019)   
Domain families : Pfam (NCBI)pfam00019   
Domain families : Smart (EMBL)TGFB (SM00204)  
DMDM Disease mutations4902
Blocks (Seattle)NRTN
SuperfamilyQ99748
Human Protein AtlasENSG00000171119
Peptide AtlasQ99748
HPRD03604
IPIIPI00017787   
Protein Interaction databases
DIP (DOE-UCLA)Q99748
IntAct (EBI)Q99748
FunCoupENSG00000171119
BioGRIDNRTN
STRING (EMBL)NRTN
ZODIACNRTN
Ontologies - Pathways
QuickGOQ99748
Ontology : AmiGOMAPK cascade  neural crest cell migration  Ras guanyl-nucleotide exchange factor activity  receptor binding  extracellular region  intracellular  transmembrane receptor protein tyrosine kinase signaling pathway  nervous system development  growth factor activity  nerve development  axon  neuron projection development  positive regulation of GTPase activity  
Ontology : EGO-EBIMAPK cascade  neural crest cell migration  Ras guanyl-nucleotide exchange factor activity  receptor binding  extracellular region  intracellular  transmembrane receptor protein tyrosine kinase signaling pathway  nervous system development  growth factor activity  nerve development  axon  neuron projection development  positive regulation of GTPase activity  
NDEx Network
Atlas of Cancer Signalling NetworkNRTN
Wikipedia pathwaysNRTN
Orthology - Evolution
OrthoDB4902
GeneTree (enSembl)ENSG00000171119
Phylogenetic Trees/Animal Genes : TreeFamNRTN
Homologs : HomoloGeneNRTN
Homology/Alignments : Family Browser (UCSC)NRTN
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerNRTN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NRTN
dbVarNRTN
ClinVarNRTN
1000_GenomesNRTN 
Exome Variant ServerNRTN
ExAC (Exome Aggregation Consortium)NRTN (select the gene name)
SNP (GeneSNP Utah)NRTN
SNP : HGBaseNRTN
Genetic variants : HAPMAPNRTN
Genomic Variants (DGV)NRTN [DGVbeta]
Mutations
ICGC Data PortalNRTN 
TCGA Data PortalNRTN 
Broad Tumor PortalNRTN
OASIS PortalNRTN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNRTN 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NRTN
DgiDB (Drug Gene Interaction Database)NRTN
DoCM (Curated mutations)NRTN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NRTN (select a term)
intoGenNRTN
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)19:5823818-5828335
CONAN: Copy Number AnalysisNRTN 
Mutations and Diseases : HGMDNRTN
OMIM602018   
MedgenNRTN
Genetic Testing Registry NRTN
NextProtQ99748 [Medical]
TSGene4902
GENETestsNRTN
Huge Navigator NRTN [HugePedia]  NRTN [HugeCancerGEM]
snp3D : Map Gene to Disease4902
BioCentury BCIQNRTN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4902
Chemical/Pharm GKB GenePA31785
Clinical trialNRTN
Miscellaneous
canSAR (ICR)NRTN (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNRTN
GoPubMedNRTN
iHOPNRTN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Apr 16 17:56:57 CEST 2016

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