Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NRTN (neurturin)

Identity

Other namesNTN
HGNC (Hugo) NRTN
LocusID (NCBI) 4902
Location 19p13.3
Location_base_pair Starts at 5823818 and ends at 5828335 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)NRTN   8007
Cards
Entrez_Gene (NCBI)NRTN  4902  neurturin
GeneCards (Weizmann)NRTN
Ensembl (Hinxton)ENSG00000171119 [Gene_View]  chr19:5823818-5828335 [Contig_View]  NRTN [Vega]
ICGC DataPortalENSG00000171119
cBioPortalNRTN
AceView (NCBI)NRTN
Genatlas (Paris)NRTN
WikiGenes4902
SOURCE (Princeton)NM_004558
Genomic and cartography
GoldenPath (UCSC)NRTN  -  19p13.3   chr19:5823818-5828335 +  19p13.3   [Description]    (hg19-Feb_2009)
EnsemblNRTN - 19p13.3 [CytoView]
Mapping of homologs : NCBINRTN [Mapview]
OMIM602018   
Gene and transcription
Genbank (Entrez)AL161995 BC137399 BC137400 U78110
RefSeq transcript (Entrez)NM_004558
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NG_008202 NT_011295 NW_001838477 NW_004929412
Consensus coding sequences : CCDS (NCBI)NRTN
Cluster EST : UnigeneHs.234775 [ NCBI ]
CGAP (NCI)Hs.234775
Alternative Splicing : Fast-db (Paris)GSHG0014499
Alternative Splicing GalleryENSG00000171119
Gene ExpressionNRTN [ NCBI-GEO ]     NRTN [ SEEK ]   NRTN [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99748 (Uniprot)
NextProtQ99748  [Medical]
With graphics : InterProQ99748
Splice isoforms : SwissVarQ99748 (Swissvar)
Domaine pattern : Prosite (Expaxy)TGF_BETA_2 (PS51362)   
Domains : Interpro (EBI)Cystine-knot_cytokine [organisation]   TGF-b_C [organisation]  
Related proteins : CluSTrQ99748
Domain families : Pfam (Sanger)TGF_beta (PF00019)   
Domain families : Pfam (NCBI)pfam00019   
Domain families : Smart (EMBL)TGFB (SM00204)  
DMDM Disease mutations4902
Blocks (Seattle)Q99748
Human Protein AtlasENSG00000171119 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ99748
HPRD03604
IPIIPI00017787   
Protein Interaction databases
DIP (DOE-UCLA)Q99748
IntAct (EBI)Q99748
FunCoupENSG00000171119
BioGRIDNRTN
InParanoidQ99748
Interologous Interaction database Q99748
IntegromeDBNRTN
STRING (EMBL)NRTN
Ontologies - Pathways
Ontology : AmiGOMAPK cascade  neural crest cell migration  receptor binding  extracellular region  transmembrane receptor protein tyrosine kinase signaling pathway  nervous system development  axon guidance  growth factor activity  nerve development  axon  neuron projection development  
Ontology : EGO-EBIMAPK cascade  neural crest cell migration  receptor binding  extracellular region  transmembrane receptor protein tyrosine kinase signaling pathway  nervous system development  axon guidance  growth factor activity  nerve development  axon  neuron projection development  
Protein Interaction DatabaseNRTN
Wikipedia pathwaysNRTN
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)NRTN
snp3D : Map Gene to Disease4902
SNP (GeneSNP Utah)NRTN
SNP : HGBaseNRTN
Genetic variants : HAPMAPNRTN
Exome VariantNRTN
1000_GenomesNRTN 
ICGC programENSG00000171119 
Somatic Mutations in Cancer : COSMICNRTN 
CONAN: Copy Number AnalysisNRTN 
Mutations and Diseases : HGMDNRTN
Mutations and Diseases : intOGenNRTN
Genomic VariantsNRTN  NRTN [DGVbeta]
dbVarNRTN
ClinVarNRTN
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM602018   
MedgenNRTN
GENETestsNRTN
Disease Genetic AssociationNRTN
Huge Navigator NRTN [HugePedia]  NRTN [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneNRTN
Homology/Alignments : Family Browser (UCSC)NRTN
Phylogenetic Trees/Animal Genes : TreeFamNRTN
Chemical/Protein Interactions : CTD4902
Chemical/Pharm GKB GenePA31785
Clinical trialNRTN
Cancer Resource (Charite)ENSG00000171119
Other databases
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
CoreMineNRTN
iHOPNRTN
OncoSearchNRTN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 16:58:10 CEST 2014

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