Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NRXN1 (neurexin 1)

Identity

Alias (NCBI)Hs.22998
PTHSL2
SCZD17
HGNC (Hugo) NRXN1
HGNC Alias symbKIAA0578
Hs.22998
LocusID (NCBI) 9378
Atlas_Id 52805
Location 2p16.3  [Link to chromosome band 2p16]
Location_base_pair Starts at 49918505 and ends at 50347756 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KCNMB2 (3q26.32) / NRXN1 (2p16.3)NRXN1 (2p16.3) / NRXN1 (2p16.3)NRXN1 (2p16.3) / PLEKHG4B (5p15.33)
NRXN1 (2p16.3) / PPP2R2B (5q32)NRXN1 (2p16.3) / TTYH1 (19q13.42)PCDHA1 (5q31.3) / NRXN1 (2p16.3)
TREX2 (Xq28) / NRXN1 (2p16.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)NRXN1   8008
Cards
Entrez_Gene (NCBI)NRXN1    neurexin 1
AliasesHs.22998; PTHSL2; SCZD17
GeneCards (Weizmann)NRXN1
Ensembl hg19 (Hinxton)ENSG00000179915 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179915 [Gene_View]  ENSG00000179915 [Sequence]  chr2:49918505-50347756 [Contig_View]  NRXN1 [Vega]
ICGC DataPortalENSG00000179915
TCGA cBioPortalNRXN1
AceView (NCBI)NRXN1
Genatlas (Paris)NRXN1
SOURCE (Princeton)NRXN1
Genetics Home Reference (NIH)NRXN1
Genomic and cartography
GoldenPath hg38 (UCSC)NRXN1  -     chr2:49918505-50347756 -  2p16.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NRXN1  -     2p16.3   [Description]    (hg19-Feb_2009)
GoldenPathNRXN1 - 2p16.3 [CytoView hg19]  NRXN1 - 2p16.3 [CytoView hg38]
ImmunoBaseENSG00000179915
Genome Data Viewer NCBINRXN1 [Mapview hg19]  
OMIM600565   614325   614332   
Gene and transcription
Genbank (Entrez)AB011150 AB035356 AF064842 AF087975 AK093260
RefSeq transcript (Entrez)NM_001135659 NM_001320156 NM_001320157 NM_001330077 NM_001330078 NM_001330079 NM_001330081 NM_001330082 NM_001330083 NM_001330084 NM_001330085 NM_001330086 NM_001330087 NM_001330088 NM_001330089 NM_001330090 NM_001330091 NM_001330092 NM_001330093 NM_001330094 NM_001330095 NM_001330096 NM_001330097 NM_004801 NM_138735
Consensus coding sequences : CCDS (NCBI)NRXN1
Gene ExpressionNRXN1 [ NCBI-GEO ]   NRXN1 [ EBI - ARRAY_EXPRESS ]   NRXN1 [ SEEK ]   NRXN1 [ MEM ]
Gene Expression Viewer (FireBrowse)NRXN1 [ Firebrowse - Broad ]
GenevisibleExpression of NRXN1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9378
GTEX Portal (Tissue expression)NRXN1
Human Protein AtlasENSG00000179915-NRXN1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NRXN1
Human Protein Atlas [tissue]ENSG00000179915-NRXN1 [tissue]
HPRD11858
Protein Interaction databases
BioGRIDNRXN1
STRING (EMBL)NRXN1
ZODIACNRXN1
Ontologies - Pathways
Litterature
PubMed143 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNRXN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:23:21 CEST 2021

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