Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NRXN3 (neurexin 3)

Identity

Alias (NCBI)C14orf60
HGNC (Hugo) NRXN3
HGNC Alias symbKIAA0743
HGNC Previous nameC14orf60
HGNC Previous namechromosome 14 open reading frame 60
LocusID (NCBI) 9369
Atlas_Id 52734
Location 14q31.1  [Link to chromosome band 14q31]
Location_base_pair Starts at 79279380 and ends at 79868291 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CNIH1 (14q22.2) / NRXN3 (14q31.1)NRXN3 (14q31.1) / FMNL1 (17q21.31)NRXN3 (14q31.1) / KDM3B (5q31.2)
SND1 (7q32.1) / NRXN3 (14q31.1)SOS2 (14q21.3) / NRXN3 (14q31.1)TNFAIP8 (5q23.1) / NRXN3 (14q31.1)
SOS2 14q21.3 / NRXN3 14q31.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)NRXN3   8010
Cards
Entrez_Gene (NCBI)NRXN3    neurexin 3
AliasesC14orf60
GeneCards (Weizmann)NRXN3
Ensembl hg19 (Hinxton)ENSG00000021645 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000021645 [Gene_View]  ENSG00000021645 [Sequence]  chr14:79279380-79868291 [Contig_View]  NRXN3 [Vega]
ICGC DataPortalENSG00000021645
TCGA cBioPortalNRXN3
AceView (NCBI)NRXN3
Genatlas (Paris)NRXN3
SOURCE (Princeton)NRXN3
Genetics Home Reference (NIH)NRXN3
Genomic and cartography
GoldenPath hg38 (UCSC)NRXN3  -     chr14:79279380-79868291 +  14q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NRXN3  -     14q31.1   [Description]    (hg19-Feb_2009)
GoldenPathNRXN3 - 14q31.1 [CytoView hg19]  NRXN3 - 14q31.1 [CytoView hg38]
ImmunoBaseENSG00000021645
genome Data Viewer NCBINRXN3 [Mapview hg19]  
OMIM600567   
Gene and transcription
Genbank (Entrez)AB018286 AJ316284 AJ493127 AK056530 AK096247
RefSeq transcript (Entrez)NM_001105250 NM_001272020 NM_001330195 NM_001366425 NM_001366426 NM_004796 NM_138970
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NRXN3
Alternative Splicing GalleryENSG00000021645
Gene ExpressionNRXN3 [ NCBI-GEO ]   NRXN3 [ EBI - ARRAY_EXPRESS ]   NRXN3 [ SEEK ]   NRXN3 [ MEM ]
Gene Expression Viewer (FireBrowse)NRXN3 [ Firebrowse - Broad ]
GenevisibleExpression of NRXN3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9369
GTEX Portal (Tissue expression)NRXN3
Human Protein AtlasENSG00000021645-NRXN3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NRXN3
Blocks (Seattle)NRXN3
Human Protein Atlas [tissue]ENSG00000021645-NRXN3 [tissue]
HPRD08989
IPIIPI00034558   IPI00419705   IPI00853624   IPI00414249   IPI00854729   IPI01025492   IPI00216728   IPI00815776   IPI01026280   IPI00915413   IPI01025976   IPI01025370   
Protein Interaction databases
BioGRIDNRXN3
STRING (EMBL)NRXN3
ZODIACNRXN3
Ontologies - Pathways
Litterature
PubMed67 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNRXN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 25 19:37:12 CET 2021

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