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NSA2 (NSA2, ribosome biogenesis homolog)

Identity

Alias_namesNSA2 ribosome biogenesis homolog (S. cerevisiae)
Alias_symbol (synonym)HUSSY-29
HCLG1
FLJ94393
TINP1
Other aliasCDK105
HCL-G1
HUSSY29
HGNC (Hugo) NSA2
LocusID (NCBI) 10412
Atlas_Id 56579
Location 5q13.3  [Link to chromosome band 5q13]
Location_base_pair Starts at 74766991 and ends at 74776912 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NSA2 (5q13.3) / HEXB (5q13.3)NSA2 (5q13.3) / NSA2 (5q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NSA2   30728
Cards
Entrez_Gene (NCBI)NSA2  10412  NSA2, ribosome biogenesis homolog
AliasesCDK105; HCL-G1; HCLG1; HUSSY-29; 
HUSSY29; TINP1
GeneCards (Weizmann)NSA2
Ensembl hg19 (Hinxton)ENSG00000164346 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164346 [Gene_View]  chr5:74766991-74776912 [Contig_View]  NSA2 [Vega]
ICGC DataPortalENSG00000164346
TCGA cBioPortalNSA2
AceView (NCBI)NSA2
Genatlas (Paris)NSA2
WikiGenes10412
SOURCE (Princeton)NSA2
Genetics Home Reference (NIH)NSA2
Genomic and cartography
GoldenPath hg38 (UCSC)NSA2  -     chr5:74766991-74776912 +  5q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NSA2  -     5q13.3   [Description]    (hg19-Feb_2009)
EnsemblNSA2 - 5q13.3 [CytoView hg19]  NSA2 - 5q13.3 [CytoView hg38]
Mapping of homologs : NCBINSA2 [Mapview hg19]  NSA2 [Mapview hg38]
OMIM612497   
Gene and transcription
Genbank (Entrez)AA830219 AA921837 AF077615 AF372458 AJ012409
RefSeq transcript (Entrez)NM_001271665 NM_014886
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NSA2
Cluster EST : UnigeneHs.482526 [ NCBI ]
CGAP (NCI)Hs.482526
Alternative Splicing GalleryENSG00000164346
Gene ExpressionNSA2 [ NCBI-GEO ]   NSA2 [ EBI - ARRAY_EXPRESS ]   NSA2 [ SEEK ]   NSA2 [ MEM ]
Gene Expression Viewer (FireBrowse)NSA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10412
GTEX Portal (Tissue expression)NSA2
Human Protein AtlasENSG00000164346-NSA2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95478   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95478  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95478
Splice isoforms : SwissVarO95478
PhosPhoSitePlusO95478
Domains : Interpro (EBI)Ribosomal_S8e/biogenesis_NSA2   
Domain families : Pfam (Sanger)Ribosomal_S8e (PF01201)   
Domain families : Pfam (NCBI)pfam01201   
Conserved Domain (NCBI)NSA2
DMDM Disease mutations10412
Blocks (Seattle)NSA2
SuperfamilyO95478
Human Protein Atlas [tissue]ENSG00000164346-NSA2 [tissue]
Peptide AtlasO95478
HPRD18191
IPIIPI00007089   IPI00968246   
Protein Interaction databases
DIP (DOE-UCLA)O95478
IntAct (EBI)O95478
FunCoupENSG00000164346
BioGRIDNSA2
STRING (EMBL)NSA2
ZODIACNSA2
Ontologies - Pathways
QuickGOO95478
Ontology : AmiGOmaturation of 5.8S rRNA  maturation of LSU-rRNA  RNA binding  nucleolus  preribosome, large subunit precursor  
Ontology : EGO-EBImaturation of 5.8S rRNA  maturation of LSU-rRNA  RNA binding  nucleolus  preribosome, large subunit precursor  
NDEx NetworkNSA2
Atlas of Cancer Signalling NetworkNSA2
Wikipedia pathwaysNSA2
Orthology - Evolution
OrthoDB10412
GeneTree (enSembl)ENSG00000164346
Phylogenetic Trees/Animal Genes : TreeFamNSA2
HOVERGENO95478
HOGENOMO95478
Homologs : HomoloGeneNSA2
Homology/Alignments : Family Browser (UCSC)NSA2
Gene fusions - Rearrangements
Tumor Fusion PortalNSA2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNSA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NSA2
dbVarNSA2
ClinVarNSA2
1000_GenomesNSA2 
Exome Variant ServerNSA2
ExAC (Exome Aggregation Consortium)ENSG00000164346
GNOMAD BrowserENSG00000164346
Genetic variants : HAPMAP10412
Genomic Variants (DGV)NSA2 [DGVbeta]
DECIPHERNSA2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNSA2 
Mutations
ICGC Data PortalNSA2 
TCGA Data PortalNSA2 
Broad Tumor PortalNSA2
OASIS PortalNSA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNSA2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNSA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NSA2
DgiDB (Drug Gene Interaction Database)NSA2
DoCM (Curated mutations)NSA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NSA2 (select a term)
intoGenNSA2
Cancer3DNSA2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612497   
Orphanet
DisGeNETNSA2
MedgenNSA2
Genetic Testing Registry NSA2
NextProtO95478 [Medical]
TSGene10412
GENETestsNSA2
Target ValidationNSA2
Huge Navigator NSA2 [HugePedia]
snp3D : Map Gene to Disease10412
BioCentury BCIQNSA2
ClinGenNSA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10412
Chemical/Pharm GKB GenePA165660390
Clinical trialNSA2
Miscellaneous
canSAR (ICR)NSA2 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNSA2
EVEXNSA2
GoPubMedNSA2
iHOPNSA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:26:50 CET 2017

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