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NSA2 (NSA2 ribosome biogenesis factor)

Identity

Alias (NCBI)CDK105
HCL-G1
HCLG1
HUSSY-29
HUSSY29
TINP1
HGNC (Hugo) NSA2
HGNC Alias symbHUSSY-29
HCLG1
FLJ94393
TINP1
HGNC Alias namehairy cell leukemia protein 1
 TGF beta-inducible nuclear protein 1
HGNC Previous nameNSA2 ribosome biogenesis homolog (S. cerevisiae)
 NSA2, ribosome biogenesis homolog
LocusID (NCBI) 10412
Atlas_Id 56579
Location 5q13.3  [Link to chromosome band 5q13]
Location_base_pair Starts at 74767249 and ends at 74780113 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NSA2 (5q13.3)::HEXB (5q13.3)NSA2 (5q13.3)::NSA2 (5q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)NSA2   30728
Cards
Entrez_Gene (NCBI)NSA2    NSA2 ribosome biogenesis factor
AliasesCDK105; HCL-G1; HCLG1; HUSSY-29; 
HUSSY29; TINP1
GeneCards (Weizmann)NSA2
Ensembl hg19 (Hinxton)ENSG00000164346 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164346 [Gene_View]  ENSG00000164346 [Sequence]  chr5:74767249-74780113 [Contig_View]  NSA2 [Vega]
ICGC DataPortalENSG00000164346
TCGA cBioPortalNSA2
AceView (NCBI)NSA2
Genatlas (Paris)NSA2
SOURCE (Princeton)NSA2
Genetics Home Reference (NIH)NSA2
Genomic and cartography
GoldenPath hg38 (UCSC)NSA2  -     chr5:74767249-74780113 +  5q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NSA2  -     5q13.3   [Description]    (hg19-Feb_2009)
GoldenPathNSA2 - 5q13.3 [CytoView hg19]  NSA2 - 5q13.3 [CytoView hg38]
ImmunoBaseENSG00000164346
Genome Data Viewer NCBINSA2 [Mapview hg19]  
OMIM612497   
Gene and transcription
Genbank (Entrez)AA830219 AA921837 AF077615 AF372458 AJ012409
RefSeq transcript (Entrez)NM_001271665 NM_001364506 NM_014886
Consensus coding sequences : CCDS (NCBI)NSA2
Gene ExpressionNSA2 [ NCBI-GEO ]   NSA2 [ EBI - ARRAY_EXPRESS ]   NSA2 [ SEEK ]   NSA2 [ MEM ]
Gene Expression Viewer (FireBrowse)NSA2 [ Firebrowse - Broad ]
GenevisibleExpression of NSA2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10412
GTEX Portal (Tissue expression)NSA2
Human Protein AtlasENSG00000164346-NSA2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95478   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95478  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95478
PhosPhoSitePlusO95478
Domains : Interpro (EBI)NSA2_fam    Ribosomal_S8e/biogenesis_NSA2   
Domain families : Pfam (Sanger)Ribosomal_S8e (PF01201)   
Domain families : Pfam (NCBI)pfam01201   
Conserved Domain (NCBI)NSA2
SuperfamilyO95478
AlphaFold pdb e-kbO95478   
Human Protein Atlas [tissue]ENSG00000164346-NSA2 [tissue]
HPRD18191
Protein Interaction databases
DIP (DOE-UCLA)O95478
IntAct (EBI)O95478
BioGRIDNSA2
STRING (EMBL)NSA2
ZODIACNSA2
Ontologies - Pathways
QuickGOO95478
Ontology : AmiGOmaturation of 5.8S rRNA  maturation of LSU-rRNA  RNA binding  nucleolus  preribosome, large subunit precursor  
Ontology : EGO-EBImaturation of 5.8S rRNA  maturation of LSU-rRNA  RNA binding  nucleolus  preribosome, large subunit precursor  
NDEx NetworkNSA2
Atlas of Cancer Signalling NetworkNSA2
Wikipedia pathwaysNSA2
Orthology - Evolution
OrthoDB10412
GeneTree (enSembl)ENSG00000164346
Phylogenetic Trees/Animal Genes : TreeFamNSA2
Homologs : HomoloGeneNSA2
Homology/Alignments : Family Browser (UCSC)NSA2
Gene fusions - Rearrangements
Fusion : QuiverNSA2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNSA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NSA2
dbVarNSA2
ClinVarNSA2
MonarchNSA2
1000_GenomesNSA2 
Exome Variant ServerNSA2
GNOMAD BrowserENSG00000164346
Varsome BrowserNSA2
ACMGNSA2 variants
VarityO95478
Genomic Variants (DGV)NSA2 [DGVbeta]
DECIPHERNSA2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNSA2 
Mutations
ICGC Data PortalNSA2 
TCGA Data PortalNSA2 
Broad Tumor PortalNSA2
OASIS PortalNSA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNSA2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNSA2
Mutations and Diseases : HGMDNSA2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaNSA2
DgiDB (Drug Gene Interaction Database)NSA2
DoCM (Curated mutations)NSA2
CIViC (Clinical Interpretations of Variants in Cancer)NSA2
Cancer3DNSA2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612497   
Orphanet
DisGeNETNSA2
MedgenNSA2
Genetic Testing Registry NSA2
NextProtO95478 [Medical]
GENETestsNSA2
Target ValidationNSA2
Huge Navigator NSA2 [HugePedia]
ClinGenNSA2
Clinical trials, drugs, therapy
MyCancerGenomeNSA2
Protein Interactions : CTDNSA2
Pharm GKB GenePA165660390
PharosO95478
Clinical trialNSA2
Miscellaneous
canSAR (ICR)NSA2
HarmonizomeNSA2
ARCHS4NSA2
DataMed IndexNSA2
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNSA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 18:25:25 CET 2022

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