Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NSFL1C (NSFL1 cofactor)

Identity

Alias_namesNSFL1 (p97) cofactor (p47)
Alias_symbol (synonym)dJ776F14.1
p47
UBXD10
UBX1
UBXN2C
Other aliasP47
HGNC (Hugo) NSFL1C
LocusID (NCBI) 55968
Atlas_Id 56008
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 1422807 and ends at 1448337 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NSFL1C (20p13) / NSFL1C (20p13)SIRPB2 (20p13) / NSFL1C (20p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NSFL1C   15912
Cards
Entrez_Gene (NCBI)NSFL1C  55968  NSFL1 cofactor
AliasesP47; UBX1; UBXD10; UBXN2C; 
dJ776F14.1
GeneCards (Weizmann)NSFL1C
Ensembl hg19 (Hinxton)ENSG00000088833 [Gene_View]  chr20:1422807-1448337 [Contig_View]  NSFL1C [Vega]
Ensembl hg38 (Hinxton)ENSG00000088833 [Gene_View]  chr20:1422807-1448337 [Contig_View]  NSFL1C [Vega]
ICGC DataPortalENSG00000088833
TCGA cBioPortalNSFL1C
AceView (NCBI)NSFL1C
Genatlas (Paris)NSFL1C
WikiGenes55968
SOURCE (Princeton)NSFL1C
Genetics Home Reference (NIH)NSFL1C
Genomic and cartography
GoldenPath hg19 (UCSC)NSFL1C  -     chr20:1422807-1448337 -  20p13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NSFL1C  -     20p13   [Description]    (hg38-Dec_2013)
EnsemblNSFL1C - 20p13 [CytoView hg19]  NSFL1C - 20p13 [CytoView hg38]
Mapping of homologs : NCBINSFL1C [Mapview hg19]  NSFL1C [Mapview hg38]
OMIM606610   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001206736 NM_016143 NM_018839 NM_182483
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NSFL1C
Cluster EST : UnigeneHs.12865 [ NCBI ]
CGAP (NCI)Hs.12865
Alternative Splicing GalleryENSG00000088833
Gene ExpressionNSFL1C [ NCBI-GEO ]   NSFL1C [ EBI - ARRAY_EXPRESS ]   NSFL1C [ SEEK ]   NSFL1C [ MEM ]
Gene Expression Viewer (FireBrowse)NSFL1C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55968
GTEX Portal (Tissue expression)NSFL1C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UNZ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UNZ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UNZ2
Splice isoforms : SwissVarQ9UNZ2
PhosPhoSitePlusQ9UNZ2
Domaine pattern : Prosite (Expaxy)SEP (PS51399)    UBX (PS50033)   
Domains : Interpro (EBI)SEP_domain    UBA-like    Ubiquitin-rel_dom    UBX_dom   
Domain families : Pfam (Sanger)SEP (PF08059)    UBX (PF00789)   
Domain families : Pfam (NCBI)pfam08059    pfam00789   
Domain families : Smart (EMBL)SEP (SM00553)  UBX (SM00166)  
Conserved Domain (NCBI)NSFL1C
DMDM Disease mutations55968
Blocks (Seattle)NSFL1C
PDB (SRS)1SS6   
PDB (PDBSum)1SS6   
PDB (IMB)1SS6   
PDB (RSDB)1SS6   
Structural Biology KnowledgeBase1SS6   
SCOP (Structural Classification of Proteins)1SS6   
CATH (Classification of proteins structures)1SS6   
SuperfamilyQ9UNZ2
Human Protein AtlasENSG00000088833
Peptide AtlasQ9UNZ2
HPRD09425
IPIIPI00100197   IPI00022830   IPI00397571   IPI00376904   IPI00443534   IPI00975879   IPI01025317   
Protein Interaction databases
DIP (DOE-UCLA)Q9UNZ2
IntAct (EBI)Q9UNZ2
FunCoupENSG00000088833
BioGRIDNSFL1C
STRING (EMBL)NSFL1C
ZODIACNSFL1C
Ontologies - Pathways
QuickGOQ9UNZ2
Ontology : AmiGOphospholipid binding  nucleus  nucleoplasm  chromosome  cytoplasm  Golgi stack  cytosol  plasma membrane  Golgi organization  nuclear envelope reassembly  ubiquitin binding  proteasome-mediated ubiquitin-dependent protein catabolic process  intermediate filament cytoskeleton  ATPase binding  membrane fusion  VCP-NSFL1C complex  
Ontology : EGO-EBIphospholipid binding  nucleus  nucleoplasm  chromosome  cytoplasm  Golgi stack  cytosol  plasma membrane  Golgi organization  nuclear envelope reassembly  ubiquitin binding  proteasome-mediated ubiquitin-dependent protein catabolic process  intermediate filament cytoskeleton  ATPase binding  membrane fusion  VCP-NSFL1C complex  
Pathways : KEGGProtein processing in endoplasmic reticulum   
NDEx NetworkNSFL1C
Atlas of Cancer Signalling NetworkNSFL1C
Wikipedia pathwaysNSFL1C
Orthology - Evolution
OrthoDB55968
GeneTree (enSembl)ENSG00000088833
Phylogenetic Trees/Animal Genes : TreeFamNSFL1C
HOVERGENQ9UNZ2
HOGENOMQ9UNZ2
Homologs : HomoloGeneNSFL1C
Homology/Alignments : Family Browser (UCSC)NSFL1C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNSFL1C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NSFL1C
dbVarNSFL1C
ClinVarNSFL1C
1000_GenomesNSFL1C 
Exome Variant ServerNSFL1C
ExAC (Exome Aggregation Consortium)NSFL1C (select the gene name)
Genetic variants : HAPMAP55968
Genomic Variants (DGV)NSFL1C [DGVbeta]
DECIPHER (Syndromes)20:1422807-1448337  ENSG00000088833
CONAN: Copy Number AnalysisNSFL1C 
Mutations
ICGC Data PortalNSFL1C 
TCGA Data PortalNSFL1C 
Broad Tumor PortalNSFL1C
OASIS PortalNSFL1C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNSFL1C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNSFL1C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NSFL1C
DgiDB (Drug Gene Interaction Database)NSFL1C
DoCM (Curated mutations)NSFL1C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NSFL1C (select a term)
intoGenNSFL1C
Cancer3DNSFL1C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606610   
Orphanet
MedgenNSFL1C
Genetic Testing Registry NSFL1C
NextProtQ9UNZ2 [Medical]
TSGene55968
GENETestsNSFL1C
Huge Navigator NSFL1C [HugePedia]
snp3D : Map Gene to Disease55968
BioCentury BCIQNSFL1C
ClinGenNSFL1C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55968
Chemical/Pharm GKB GenePA31794
Clinical trialNSFL1C
Miscellaneous
canSAR (ICR)NSFL1C (select the gene name)
Probes
Litterature
PubMed48 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNSFL1C
EVEXNSFL1C
GoPubMedNSFL1C
iHOPNSFL1C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 13:19:26 CET 2017

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