Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NSG1 (neuronal vesicle trafficking associated 1)

Identity

Alias (NCBI)D4S234
D4S234E
NEEP21
P21
HGNC (Hugo) NSG1
LocusID (NCBI) 27065
Atlas_Id 70985
Location 4p16.3  [Link to chromosome band 4p16]
Location_base_pair Starts at 4386963 and ends at 4419058 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NSG1   18790
Cards
Entrez_Gene (NCBI)NSG1  27065  neuronal vesicle trafficking associated 1
AliasesD4S234; D4S234E; NEEP21; P21
GeneCards (Weizmann)NSG1
Ensembl hg19 (Hinxton)ENSG00000168824 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168824 [Gene_View]  ENSG00000168824 [Sequence]  chr4:4386963-4419058 [Contig_View]  NSG1 [Vega]
ICGC DataPortalENSG00000168824
TCGA cBioPortalNSG1
AceView (NCBI)NSG1
Genatlas (Paris)NSG1
WikiGenes27065
SOURCE (Princeton)NSG1
Genetics Home Reference (NIH)NSG1
Genomic and cartography
GoldenPath hg38 (UCSC)NSG1  -     chr4:4386963-4419058 +  4p16.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NSG1  -     4p16.3   [Description]    (hg19-Feb_2009)
GoldenPathNSG1 - 4p16.3 [CytoView hg19]  NSG1 - 4p16.3 [CytoView hg38]
ImmunoBaseENSG00000168824
genome Data Viewer NCBINSG1 [Mapview hg19]  
OMIM607645   
Gene and transcription
Genbank (Entrez)AK094573 AK125065 AK125172 AK299657 AK301911
RefSeq transcript (Entrez)NM_001040101 NM_001287763 NM_001287764 NM_014392
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NSG1
Alternative Splicing GalleryENSG00000168824
Gene ExpressionNSG1 [ NCBI-GEO ]   NSG1 [ EBI - ARRAY_EXPRESS ]   NSG1 [ SEEK ]   NSG1 [ MEM ]
Gene Expression Viewer (FireBrowse)NSG1 [ Firebrowse - Broad ]
GenevisibleExpression of NSG1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27065
GTEX Portal (Tissue expression)NSG1
Human Protein AtlasENSG00000168824-NSG1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP42857   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP42857  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP42857
Splice isoforms : SwissVarP42857
PhosPhoSitePlusP42857
Domains : Interpro (EBI)NSG   
Domain families : Pfam (Sanger)Calcyon (PF06387)   
Domain families : Pfam (NCBI)pfam06387   
Conserved Domain (NCBI)NSG1
DMDM Disease mutations27065
Blocks (Seattle)NSG1
SuperfamilyP42857
Human Protein Atlas [tissue]ENSG00000168824-NSG1 [tissue]
Peptide AtlasP42857
HPRD09624
IPIIPI00002334   IPI00909464   
Protein Interaction databases
DIP (DOE-UCLA)P42857
IntAct (EBI)P42857
FunCoupENSG00000168824
BioGRIDNSG1
STRING (EMBL)NSG1
ZODIACNSG1
Ontologies - Pathways
QuickGOP42857
Ontology : AmiGOreceptor recycling  positive regulation of receptor recycling  signaling receptor binding  protein binding  nucleus  cytoplasm  endosome  endosome  late endosome  endoplasmic reticulum  endoplasmic reticulum membrane  apoptotic process  dopamine receptor signaling pathway  integral component of membrane  endosomal transport  lateral plasma membrane  dendrite  cytoplasmic vesicle membrane  early endosome membrane  clathrin light chain binding  Golgi cisterna membrane  multivesicular body membrane  trans-Golgi network membrane  somatodendritic compartment  amyloid precursor protein metabolic process  lysosomal lumen  postsynaptic membrane  clathrin coat assembly  recycling endosome membrane  spontaneous synaptic transmission  postsynaptic endosome  neurotransmitter receptor transport, endosome to postsynaptic membrane  glutamatergic synapse  vesicle-mediated transport in synapse  neurotransmitter receptor cycle  postsynaptic neurotransmitter receptor cycle  regulation of long-term synaptic potentiation  
Ontology : EGO-EBIreceptor recycling  positive regulation of receptor recycling  signaling receptor binding  protein binding  nucleus  cytoplasm  endosome  endosome  late endosome  endoplasmic reticulum  endoplasmic reticulum membrane  apoptotic process  dopamine receptor signaling pathway  integral component of membrane  endosomal transport  lateral plasma membrane  dendrite  cytoplasmic vesicle membrane  early endosome membrane  clathrin light chain binding  Golgi cisterna membrane  multivesicular body membrane  trans-Golgi network membrane  somatodendritic compartment  amyloid precursor protein metabolic process  lysosomal lumen  postsynaptic membrane  clathrin coat assembly  recycling endosome membrane  spontaneous synaptic transmission  postsynaptic endosome  neurotransmitter receptor transport, endosome to postsynaptic membrane  glutamatergic synapse  vesicle-mediated transport in synapse  neurotransmitter receptor cycle  postsynaptic neurotransmitter receptor cycle  regulation of long-term synaptic potentiation  
NDEx NetworkNSG1
Atlas of Cancer Signalling NetworkNSG1
Wikipedia pathwaysNSG1
Orthology - Evolution
OrthoDB27065
GeneTree (enSembl)ENSG00000168824
Phylogenetic Trees/Animal Genes : TreeFamNSG1
HOGENOMP42857
Homologs : HomoloGeneNSG1
Homology/Alignments : Family Browser (UCSC)NSG1
Gene fusions - Rearrangements
Fusion : QuiverNSG1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNSG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NSG1
dbVarNSG1
ClinVarNSG1
1000_GenomesNSG1 
Exome Variant ServerNSG1
GNOMAD BrowserENSG00000168824
Varsome BrowserNSG1
Genetic variants : HAPMAP27065
Genomic Variants (DGV)NSG1 [DGVbeta]
DECIPHERNSG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNSG1 
Mutations
ICGC Data PortalNSG1 
TCGA Data PortalNSG1 
Broad Tumor PortalNSG1
OASIS PortalNSG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNSG1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNSG1
Mutations and Diseases : HGMDNSG1
BioMutasearch NSG1
DgiDB (Drug Gene Interaction Database)NSG1
DoCM (Curated mutations)NSG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NSG1 (select a term)
intoGenNSG1
Cancer3DNSG1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607645   
Orphanet
DisGeNETNSG1
MedgenNSG1
Genetic Testing Registry NSG1
NextProtP42857 [Medical]
TSGene27065
GENETestsNSG1
Target ValidationNSG1
Huge Navigator NSG1 [HugePedia]
snp3D : Map Gene to Disease27065
BioCentury BCIQNSG1
ClinGenNSG1
Clinical trials, drugs, therapy
Protein Interactions : CTD27065
Clinical trialNSG1
Miscellaneous
canSAR (ICR)NSG1 (select the gene name)
HarmonizomeNSG1
DataMed IndexNSG1
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNSG1
EVEXNSG1
GoPubMedNSG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Sat Aug 22 19:29:09 CEST 2020

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