Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NSG1 (neuron specific gene family member 1)

Identity

Other aliasD4S234
D4S234E
NEEP21
P21
HGNC (Hugo) -
LocusID (NCBI) 27065
Atlas_Id 70985
Location 4p16.3  [Link to chromosome band 4p16]
Location_base_pair Starts at 4386256 and ends at 4419058 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)NSG1  27065  neuron specific gene family member 1
AliasesD4S234; D4S234E; NEEP21; P21
GeneCards (Weizmann)NSG1
Ensembl hg19 (Hinxton)ENSG00000168824 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168824 [Gene_View]  chr4:4386256-4419058 [Contig_View]  NSG1 [Vega]
ICGC DataPortalENSG00000168824
TCGA cBioPortalNSG1
AceView (NCBI)NSG1
Genatlas (Paris)NSG1
WikiGenes27065
SOURCE (Princeton)NSG1
Genetics Home Reference (NIH)NSG1
Genomic and cartography
GoldenPath hg38 (UCSC)NSG1  -     chr4:4386256-4419058 +  4p16.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NSG1  -     4p16.3   [Description]    (hg19-Feb_2009)
EnsemblNSG1 - 4p16.3 [CytoView hg19]  NSG1 - 4p16.3 [CytoView hg38]
Mapping of homologs : NCBINSG1 [Mapview hg19]  NSG1 [Mapview hg38]
OMIM607645   
Gene and transcription
Genbank (Entrez)AK094573 AK125065 AK125172 AK299657 AK301911
RefSeq transcript (Entrez)NM_001040101 NM_001287763 NM_001287764 NM_014392
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NSG1
Cluster EST : UnigeneHs.518595 [ NCBI ]
CGAP (NCI)Hs.518595
Alternative Splicing GalleryENSG00000168824
Gene ExpressionNSG1 [ NCBI-GEO ]   NSG1 [ EBI - ARRAY_EXPRESS ]   NSG1 [ SEEK ]   NSG1 [ MEM ]
Gene Expression Viewer (FireBrowse)NSG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27065
GTEX Portal (Tissue expression)NSG1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP42857   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP42857  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP42857
Splice isoforms : SwissVarP42857
PhosPhoSitePlusP42857
Domains : Interpro (EBI)Calcyon_neuron-sp   
Domain families : Pfam (Sanger)Calcyon (PF06387)   
Domain families : Pfam (NCBI)pfam06387   
Conserved Domain (NCBI)NSG1
DMDM Disease mutations27065
Blocks (Seattle)NSG1
SuperfamilyP42857
Human Protein AtlasENSG00000168824
Peptide AtlasP42857
HPRD09624
IPIIPI00002334   IPI00909464   
Protein Interaction databases
DIP (DOE-UCLA)P42857
IntAct (EBI)P42857
FunCoupENSG00000168824
BioGRIDNSG1
STRING (EMBL)NSG1
ZODIACNSG1
Ontologies - Pathways
QuickGOP42857
Ontology : AmiGOGolgi membrane  positive regulation of receptor recycling  receptor binding  protein binding  nucleus  cytoplasm  endosome  dopamine receptor signaling pathway  integral component of membrane  endosomal transport  lateral plasma membrane  clathrin light chain binding  postsynaptic membrane  clathrin coat assembly  postsynaptic endosome  neurotransmitter receptor transport, endosome to postsynaptic membrane  
Ontology : EGO-EBIGolgi membrane  positive regulation of receptor recycling  receptor binding  protein binding  nucleus  cytoplasm  endosome  dopamine receptor signaling pathway  integral component of membrane  endosomal transport  lateral plasma membrane  clathrin light chain binding  postsynaptic membrane  clathrin coat assembly  postsynaptic endosome  neurotransmitter receptor transport, endosome to postsynaptic membrane  
NDEx NetworkNSG1
Atlas of Cancer Signalling NetworkNSG1
Wikipedia pathwaysNSG1
Orthology - Evolution
OrthoDB27065
GeneTree (enSembl)ENSG00000168824
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENP42857
HOGENOMP42857
Homologs : HomoloGeneNSG1
Homology/Alignments : Family Browser (UCSC)NSG1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNSG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NSG1
dbVarNSG1
ClinVarNSG1
1000_GenomesNSG1 
Exome Variant ServerNSG1
ExAC (Exome Aggregation Consortium)NSG1 (select the gene name)
Genetic variants : HAPMAP27065
Genomic Variants (DGV)NSG1 [DGVbeta]
DECIPHERNSG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNSG1 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch NSG1
DgiDB (Drug Gene Interaction Database)NSG1
DoCM (Curated mutations)NSG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NSG1 (select a term)
intoGenNSG1
Cancer3DNSG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607645   
Orphanet
MedgenNSG1
Genetic Testing Registry NSG1
NextProtP42857 [Medical]
TSGene27065
GENETestsNSG1
Target ValidationNSG1
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease27065
BioCentury BCIQNSG1
ClinGenNSG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27065
Clinical trialNSG1
Miscellaneous
canSAR (ICR)NSG1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNSG1
EVEXNSG1
GoPubMedNSG1
iHOPNSG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:21 CEST 2017

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