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NSG2 (neuronal vesicle trafficking associated 2)

Identity

Alias_symbol (synonym)HMP19
Nsg2
CALY3
Other alias
HGNC (Hugo) NSG2
LocusID (NCBI) 51617
Atlas_Id 79737
Location 5q35.2  [Link to chromosome band 5q35]
Location_base_pair Starts at 174045604 and ends at 174109179 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)NSG2   24955
Cards
Entrez_Gene (NCBI)NSG2  51617  neuronal vesicle trafficking associated 2
AliasesCALY3; HMP19
GeneCards (Weizmann)NSG2
Ensembl hg19 (Hinxton)ENSG00000170091 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170091 [Gene_View]  ENSG00000170091 [Sequence]  chr5:174045604-174109179 [Contig_View]  NSG2 [Vega]
ICGC DataPortalENSG00000170091
TCGA cBioPortalNSG2
AceView (NCBI)NSG2
Genatlas (Paris)NSG2
WikiGenes51617
SOURCE (Princeton)NSG2
Genetics Home Reference (NIH)NSG2
Genomic and cartography
GoldenPath hg38 (UCSC)NSG2  -     chr5:174045604-174109179 +  5q35.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NSG2  -     5q35.2   [Description]    (hg19-Feb_2009)
EnsemblNSG2 - 5q35.2 [CytoView hg19]  NSG2 - 5q35.2 [CytoView hg38]
Mapping of homologs : NCBINSG2 [Mapview hg19]  NSG2 [Mapview hg38]
OMIM616752   
Gene and transcription
Genbank (Entrez)AF113537 AF123767 AF133422 AK098398 AK294383
RefSeq transcript (Entrez)NM_015980
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NSG2
Cluster EST : UnigeneHs.559412 [ NCBI ]
CGAP (NCI)Hs.559412
Alternative Splicing GalleryENSG00000170091
Gene ExpressionNSG2 [ NCBI-GEO ]   NSG2 [ EBI - ARRAY_EXPRESS ]   NSG2 [ SEEK ]   NSG2 [ MEM ]
Gene Expression Viewer (FireBrowse)NSG2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51617
GTEX Portal (Tissue expression)NSG2
Human Protein AtlasENSG00000170091-NSG2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y328   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y328  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y328
Splice isoforms : SwissVarQ9Y328
PhosPhoSitePlusQ9Y328
Domains : Interpro (EBI)Calcyon_neuron-sp   
Domain families : Pfam (Sanger)Calcyon (PF06387)   
Domain families : Pfam (NCBI)pfam06387   
Conserved Domain (NCBI)NSG2
DMDM Disease mutations51617
Blocks (Seattle)NSG2
SuperfamilyQ9Y328
Human Protein Atlas [tissue]ENSG00000170091-NSG2 [tissue]
Peptide AtlasQ9Y328
IPIIPI00006470   IPI00973789   IPI00980744   IPI00981454   IPI00984904   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y328
IntAct (EBI)Q9Y328
FunCoupENSG00000170091
BioGRIDNSG2
STRING (EMBL)NSG2
ZODIACNSG2
Ontologies - Pathways
QuickGOQ9Y328
Ontology : AmiGOendosome  dopamine receptor signaling pathway  integral component of membrane  endosomal transport  cytoplasmic vesicle membrane  clathrin light chain binding  Golgi cisterna membrane  multivesicular body membrane  clathrin coat assembly  
Ontology : EGO-EBIendosome  dopamine receptor signaling pathway  integral component of membrane  endosomal transport  cytoplasmic vesicle membrane  clathrin light chain binding  Golgi cisterna membrane  multivesicular body membrane  clathrin coat assembly  
NDEx NetworkNSG2
Atlas of Cancer Signalling NetworkNSG2
Wikipedia pathwaysNSG2
Orthology - Evolution
OrthoDB51617
GeneTree (enSembl)ENSG00000170091
Phylogenetic Trees/Animal Genes : TreeFamNSG2
HOVERGENQ9Y328
HOGENOMQ9Y328
Homologs : HomoloGeneNSG2
Homology/Alignments : Family Browser (UCSC)NSG2
Gene fusions - Rearrangements
Fusion : QuiverNSG2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNSG2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NSG2
dbVarNSG2
ClinVarNSG2
1000_GenomesNSG2 
Exome Variant ServerNSG2
ExAC (Exome Aggregation Consortium)ENSG00000170091
GNOMAD BrowserENSG00000170091
Varsome BrowserNSG2
Genetic variants : HAPMAP51617
Genomic Variants (DGV)NSG2 [DGVbeta]
DECIPHERNSG2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNSG2 
Mutations
ICGC Data PortalNSG2 
TCGA Data PortalNSG2 
Broad Tumor PortalNSG2
OASIS PortalNSG2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNSG2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NSG2
DgiDB (Drug Gene Interaction Database)NSG2
DoCM (Curated mutations)NSG2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NSG2 (select a term)
intoGenNSG2
Cancer3DNSG2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616752   
Orphanet
DisGeNETNSG2
MedgenNSG2
Genetic Testing Registry NSG2
NextProtQ9Y328 [Medical]
TSGene51617
GENETestsNSG2
Target ValidationNSG2
Huge Navigator NSG2 [HugePedia]
snp3D : Map Gene to Disease51617
BioCentury BCIQNSG2
ClinGenNSG2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51617
Clinical trialNSG2
Miscellaneous
canSAR (ICR)NSG2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNSG2
EVEXNSG2
GoPubMedNSG2
iHOPNSG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:20:26 CEST 2018

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