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NSL1 (NSL1, MIS12 kinetochore complex component)

Identity

Alias_namesC1orf48
chromosome 1 open reading frame 48
NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)
Alias_symbol (synonym)DC8
DKFZP566O1646
MIS14
Other alias
HGNC (Hugo) NSL1
LocusID (NCBI) 25936
Atlas_Id 70986
Location 1q32.3  [Link to chromosome band 1q32]
Location_base_pair Starts at 212726153 and ends at 212791797 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HDAC3 (5q31.3) / NSL1 (1q32.3)IGHMBP2 (11q13.3) / NSL1 (1q32.3)NSL1 (1q32.3) / NSL1 (1q32.3)
NSL1 (1q32.3) / PRKAR1A (17q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NSL1   24548
Cards
Entrez_Gene (NCBI)NSL1  25936  NSL1, MIS12 kinetochore complex component
AliasesC1orf48; DC8; MIS14
GeneCards (Weizmann)NSL1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:212726153-212791797 [Contig_View]  NSL1 [Vega]
TCGA cBioPortalNSL1
AceView (NCBI)NSL1
Genatlas (Paris)NSL1
WikiGenes25936
SOURCE (Princeton)NSL1
Genetics Home Reference (NIH)NSL1
Genomic and cartography
GoldenPath hg38 (UCSC)NSL1  -     chr1:212726153-212791797 -  1q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NSL1  -     1q32.3   [Description]    (hg19-Feb_2009)
EnsemblNSL1 - 1q32.3 [CytoView hg19]  NSL1 - 1q32.3 [CytoView hg38]
Mapping of homologs : NCBINSL1 [Mapview hg19]  NSL1 [Mapview hg38]
OMIM609174   
Gene and transcription
Genbank (Entrez)AA806390 AF201941 AF255793 AI703127 AK092359
RefSeq transcript (Entrez)NM_001042549 NM_001297736 NM_001297737 NM_001297739 NM_015471
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NSL1
Cluster EST : UnigeneHs.497692 [ NCBI ]
CGAP (NCI)Hs.497692
Gene ExpressionNSL1 [ NCBI-GEO ]   NSL1 [ EBI - ARRAY_EXPRESS ]   NSL1 [ SEEK ]   NSL1 [ MEM ]
Gene Expression Viewer (FireBrowse)NSL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25936
GTEX Portal (Tissue expression)NSL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96IY1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96IY1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96IY1
Splice isoforms : SwissVarQ96IY1
PhosPhoSitePlusQ96IY1
Domains : Interpro (EBI)Kinetochore_Mis14   
Domain families : Pfam (Sanger)Mis14 (PF08641)   
Domain families : Pfam (NCBI)pfam08641   
Conserved Domain (NCBI)NSL1
DMDM Disease mutations25936
Blocks (Seattle)NSL1
PDB (SRS)4NF9    5LSI    5LSJ    5LSK   
PDB (PDBSum)4NF9    5LSI    5LSJ    5LSK   
PDB (IMB)4NF9    5LSI    5LSJ    5LSK   
PDB (RSDB)4NF9    5LSI    5LSJ    5LSK   
Structural Biology KnowledgeBase4NF9    5LSI    5LSJ    5LSK   
SCOP (Structural Classification of Proteins)4NF9    5LSI    5LSJ    5LSK   
CATH (Classification of proteins structures)4NF9    5LSI    5LSJ    5LSK   
SuperfamilyQ96IY1
Peptide AtlasQ96IY1
HPRD12378
IPIIPI00306330   IPI00909118   IPI00643155   IPI00514565   
Protein Interaction databases
DIP (DOE-UCLA)Q96IY1
IntAct (EBI)Q96IY1
BioGRIDNSL1
STRING (EMBL)NSL1
ZODIACNSL1
Ontologies - Pathways
QuickGOQ96IY1
Ontology : AmiGOmitotic sister chromatid segregation  MIS12/MIND type complex  protein binding  nucleoplasm  cytosol  cytosol  sister chromatid cohesion  nuclear speck  cell division  
Ontology : EGO-EBImitotic sister chromatid segregation  MIS12/MIND type complex  protein binding  nucleoplasm  cytosol  cytosol  sister chromatid cohesion  nuclear speck  cell division  
NDEx NetworkNSL1
Atlas of Cancer Signalling NetworkNSL1
Wikipedia pathwaysNSL1
Orthology - Evolution
OrthoDB25936
Phylogenetic Trees/Animal Genes : TreeFamNSL1
HOVERGENQ96IY1
HOGENOMQ96IY1
Homologs : HomoloGeneNSL1
Homology/Alignments : Family Browser (UCSC)NSL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNSL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NSL1
dbVarNSL1
ClinVarNSL1
1000_GenomesNSL1 
Exome Variant ServerNSL1
ExAC (Exome Aggregation Consortium)NSL1 (select the gene name)
Genetic variants : HAPMAP25936
Genomic Variants (DGV)NSL1 [DGVbeta]
DECIPHERNSL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNSL1 
Mutations
ICGC Data PortalNSL1 
TCGA Data PortalNSL1 
Broad Tumor PortalNSL1
OASIS PortalNSL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNSL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNSL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NSL1
DgiDB (Drug Gene Interaction Database)NSL1
DoCM (Curated mutations)NSL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NSL1 (select a term)
intoGenNSL1
Cancer3DNSL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609174   
Orphanet
MedgenNSL1
Genetic Testing Registry NSL1
NextProtQ96IY1 [Medical]
TSGene25936
GENETestsNSL1
Target ValidationNSL1
Huge Navigator NSL1 [HugePedia]
snp3D : Map Gene to Disease25936
BioCentury BCIQNSL1
ClinGenNSL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25936
Chemical/Pharm GKB GenePA162398188
Clinical trialNSL1
Miscellaneous
canSAR (ICR)NSL1 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNSL1
EVEXNSL1
GoPubMedNSL1
iHOPNSL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:22 CEST 2017

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