Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NSMF (NMDA receptor synaptonuclear signaling and neuronal migration factor)

Identity

Alias_namesNELF
nasal embryonic LHRH factor
Other aliasHH9
HGNC (Hugo) NSMF
LocusID (NCBI) 26012
Atlas_Id 70988
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 140342023 and ends at 140353786 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NSMF (9q34.3) / JAG2 (14q32.33)NSMF (9q34.3) / PNPLA7 (9q34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NSMF   29843
Cards
Entrez_Gene (NCBI)NSMF  26012  NMDA receptor synaptonuclear signaling and neuronal migration factor
AliasesHH9; NELF
GeneCards (Weizmann)NSMF
Ensembl hg19 (Hinxton)ENSG00000165802 [Gene_View]  chr9:140342023-140353786 [Contig_View]  NSMF [Vega]
Ensembl hg38 (Hinxton)ENSG00000165802 [Gene_View]  chr9:140342023-140353786 [Contig_View]  NSMF [Vega]
ICGC DataPortalENSG00000165802
TCGA cBioPortalNSMF
AceView (NCBI)NSMF
Genatlas (Paris)NSMF
WikiGenes26012
SOURCE (Princeton)NSMF
Genetics Home Reference (NIH)NSMF
Genomic and cartography
GoldenPath hg19 (UCSC)NSMF  -     chr9:140342023-140353786 -  9q34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NSMF  -     9q34.3   [Description]    (hg38-Dec_2013)
EnsemblNSMF - 9q34.3 [CytoView hg19]  NSMF - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBINSMF [Mapview hg19]  NSMF [Mapview hg38]
OMIM608137   614838   
Gene and transcription
Genbank (Entrez)AJ420418 AK027474 AK074602 AK292030 AK294320
RefSeq transcript (Entrez)NM_001130969 NM_001130970 NM_001130971 NM_001178064 NM_015537
RefSeq genomic (Entrez)NC_000009 NC_018920 NG_021362 NT_008470 NW_004929369
Consensus coding sequences : CCDS (NCBI)NSMF
Cluster EST : UnigeneHs.455336 [ NCBI ]
CGAP (NCI)Hs.455336
Alternative Splicing GalleryENSG00000165802
Gene ExpressionNSMF [ NCBI-GEO ]   NSMF [ EBI - ARRAY_EXPRESS ]   NSMF [ SEEK ]   NSMF [ MEM ]
Gene Expression Viewer (FireBrowse)NSMF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26012
GTEX Portal (Tissue expression)NSMF
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6X4W1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6X4W1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6X4W1
Splice isoforms : SwissVarQ6X4W1
PhosPhoSitePlusQ6X4W1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NSMF
DMDM Disease mutations26012
Blocks (Seattle)NSMF
SuperfamilyQ6X4W1
Human Protein AtlasENSG00000165802
Peptide AtlasQ6X4W1
HPRD10485
IPIIPI00465371   IPI00607696   IPI00607697   IPI00607710   IPI00450993   IPI00910292   IPI01013532   IPI00873074   IPI00922587   IPI00514110   
Protein Interaction databases
DIP (DOE-UCLA)Q6X4W1
IntAct (EBI)Q6X4W1
FunCoupENSG00000165802
BioGRIDNSMF
STRING (EMBL)NSMF
ZODIACNSMF
Ontologies - Pathways
QuickGOQ6X4W1
Ontology : AmiGOnucleus  nuclear envelope  nucleoplasm  nuclear euchromatin  cytoplasm  postsynaptic density  membrane  nuclear matrix  cell junction  dendrite  cortical cytoskeleton  nuclear membrane  positive regulation of protein dephosphorylation  neuron projection  perikaryon  regulation of neuron apoptotic process  synapse  postsynaptic membrane  regulation of neuronal synaptic plasticity  calcium-dependent protein binding  regulation of dendrite morphogenesis  cellular response to amino acid stimulus  cellular response to electrical stimulus  cellular response to gonadotropin stimulus  apical dendrite  positive regulation of neuron migration  
Ontology : EGO-EBInucleus  nuclear envelope  nucleoplasm  nuclear euchromatin  cytoplasm  postsynaptic density  membrane  nuclear matrix  cell junction  dendrite  cortical cytoskeleton  nuclear membrane  positive regulation of protein dephosphorylation  neuron projection  perikaryon  regulation of neuron apoptotic process  synapse  postsynaptic membrane  regulation of neuronal synaptic plasticity  calcium-dependent protein binding  regulation of dendrite morphogenesis  cellular response to amino acid stimulus  cellular response to electrical stimulus  cellular response to gonadotropin stimulus  apical dendrite  positive regulation of neuron migration  
NDEx NetworkNSMF
Atlas of Cancer Signalling NetworkNSMF
Wikipedia pathwaysNSMF
Orthology - Evolution
OrthoDB26012
GeneTree (enSembl)ENSG00000165802
Phylogenetic Trees/Animal Genes : TreeFamNSMF
HOVERGENQ6X4W1
HOGENOMQ6X4W1
Homologs : HomoloGeneNSMF
Homology/Alignments : Family Browser (UCSC)NSMF
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNSMF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NSMF
dbVarNSMF
ClinVarNSMF
1000_GenomesNSMF 
Exome Variant ServerNSMF
ExAC (Exome Aggregation Consortium)NSMF (select the gene name)
Genetic variants : HAPMAP26012
Genomic Variants (DGV)NSMF [DGVbeta]
DECIPHER (Syndromes)9:140342023-140353786  ENSG00000165802
CONAN: Copy Number AnalysisNSMF 
Mutations
ICGC Data PortalNSMF 
TCGA Data PortalNSMF 
Broad Tumor PortalNSMF
OASIS PortalNSMF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNSMF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNSMF
BioMutasearch NSMF
DgiDB (Drug Gene Interaction Database)NSMF
DoCM (Curated mutations)NSMF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NSMF (select a term)
intoGenNSMF
Cancer3DNSMF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608137    614838   
Orphanet3249    8668   
MedgenNSMF
Genetic Testing Registry NSMF
NextProtQ6X4W1 [Medical]
TSGene26012
GENETestsNSMF
Huge Navigator NSMF [HugePedia]
snp3D : Map Gene to Disease26012
BioCentury BCIQNSMF
ClinGenNSMF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26012
Chemical/Pharm GKB GenePA134917144
Clinical trialNSMF
Miscellaneous
canSAR (ICR)NSMF (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNSMF
EVEXNSMF
GoPubMedNSMF
iHOPNSMF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:35:26 CET 2017

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