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NSUN3 (NOP2/Sun RNA methyltransferase family member 3)

Identity

Alias_namesNOL1/NOP2/Sun domain family, member 3
NOP2/Sun domain family, member 3
Alias_symbol (synonym)FLJ22609
Other aliasMST077
MSTP077
HGNC (Hugo) NSUN3
LocusID (NCBI) 63899
Atlas_Id 70990
Location 3q11.2  [Link to chromosome band 3q11]
Location_base_pair Starts at 94062905 and ends at 94131831 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MYL3 (3p21.31) / NSUN3 (3q11.1)NSUN3 (3q11.1) / GSPT1 (16p13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NSUN3   26208
Cards
Entrez_Gene (NCBI)NSUN3  63899  NOP2/Sun RNA methyltransferase family member 3
AliasesMST077; MSTP077
GeneCards (Weizmann)NSUN3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:94062905-94131831 [Contig_View]  NSUN3 [Vega]
TCGA cBioPortalNSUN3
AceView (NCBI)NSUN3
Genatlas (Paris)NSUN3
WikiGenes63899
SOURCE (Princeton)NSUN3
Genetics Home Reference (NIH)NSUN3
Genomic and cartography
GoldenPath hg38 (UCSC)NSUN3  -     chr3:94062905-94131831 +  3q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NSUN3  -     3q11.2   [Description]    (hg19-Feb_2009)
EnsemblNSUN3 - 3q11.2 [CytoView hg19]  NSUN3 - 3q11.2 [CytoView hg38]
Mapping of homologs : NCBINSUN3 [Mapview hg19]  NSUN3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF169972 AK026262 BC018432 BC020602 BC057238
RefSeq transcript (Entrez)NM_022072
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NSUN3
Cluster EST : UnigeneHs.448003 [ NCBI ]
CGAP (NCI)Hs.448003
Gene ExpressionNSUN3 [ NCBI-GEO ]   NSUN3 [ EBI - ARRAY_EXPRESS ]   NSUN3 [ SEEK ]   NSUN3 [ MEM ]
Gene Expression Viewer (FireBrowse)NSUN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63899
GTEX Portal (Tissue expression)NSUN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H649   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H649  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H649
Splice isoforms : SwissVarQ9H649
PhosPhoSitePlusQ9H649
Domaine pattern : Prosite (Expaxy)SAM_MT_RSMB_NOP (PS51686)   
Domains : Interpro (EBI)MeTrfase_RsmB/NOP2    RCMT    SAM-dependent_MTases   
Domain families : Pfam (Sanger)Methyltr_RsmB-F (PF01189)   
Domain families : Pfam (NCBI)pfam01189   
Conserved Domain (NCBI)NSUN3
DMDM Disease mutations63899
Blocks (Seattle)NSUN3
SuperfamilyQ9H649
Peptide AtlasQ9H649
HPRD08657
IPIIPI00004969   IPI00947469   
Protein Interaction databases
DIP (DOE-UCLA)Q9H649
IntAct (EBI)Q9H649
BioGRIDNSUN3
STRING (EMBL)NSUN3
ZODIACNSUN3
Ontologies - Pathways
QuickGOQ9H649
Ontology : AmiGOtRNA binding  tRNA wobble base cytosine methylation  mitochondrion  mitochondrial matrix  mitochondrial large ribosomal subunit  methyltransferase activity  tRNA (cytosine-5-)-methyltransferase activity  rRNA methylation  regulation of mitochondrial translation  
Ontology : EGO-EBItRNA binding  tRNA wobble base cytosine methylation  mitochondrion  mitochondrial matrix  mitochondrial large ribosomal subunit  methyltransferase activity  tRNA (cytosine-5-)-methyltransferase activity  rRNA methylation  regulation of mitochondrial translation  
NDEx NetworkNSUN3
Atlas of Cancer Signalling NetworkNSUN3
Wikipedia pathwaysNSUN3
Orthology - Evolution
OrthoDB63899
Phylogenetic Trees/Animal Genes : TreeFamNSUN3
HOVERGENQ9H649
HOGENOMQ9H649
Homologs : HomoloGeneNSUN3
Homology/Alignments : Family Browser (UCSC)NSUN3
Gene fusions - Rearrangements
Tumor Fusion PortalNSUN3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNSUN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NSUN3
dbVarNSUN3
ClinVarNSUN3
1000_GenomesNSUN3 
Exome Variant ServerNSUN3
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP63899
Genomic Variants (DGV)NSUN3 [DGVbeta]
DECIPHERNSUN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNSUN3 
Mutations
ICGC Data PortalNSUN3 
TCGA Data PortalNSUN3 
Broad Tumor PortalNSUN3
OASIS PortalNSUN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNSUN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNSUN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NSUN3
DgiDB (Drug Gene Interaction Database)NSUN3
DoCM (Curated mutations)NSUN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NSUN3 (select a term)
intoGenNSUN3
Cancer3DNSUN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETNSUN3
MedgenNSUN3
Genetic Testing Registry NSUN3
NextProtQ9H649 [Medical]
TSGene63899
GENETestsNSUN3
Target ValidationNSUN3
Huge Navigator NSUN3 [HugePedia]
snp3D : Map Gene to Disease63899
BioCentury BCIQNSUN3
ClinGenNSUN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63899
Chemical/Pharm GKB GenePA134961151
Clinical trialNSUN3
Miscellaneous
canSAR (ICR)NSUN3 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNSUN3
EVEXNSUN3
GoPubMedNSUN3
iHOPNSUN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 13:08:38 CET 2017

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