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NSUN5 (NOP2/Sun RNA methyltransferase family member 5)

Identity

Alias_namesmember 5A
WBSCR20
WBSCR20A
Alias_symbol (synonym)NOL1R
p120(NOL1)
FLJ10267
NSUN5A
Ynl022cL
Other aliasNOL1
p120
HGNC (Hugo) NSUN5
LocusID (NCBI) 55695
Atlas_Id 54511
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 73302516 and ends at 73308867 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NSUN5 (7q11.23) / BCL7B (7q11.23)NSUN5 (7q11.23) / TCF3 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NSUN5   16385
Cards
Entrez_Gene (NCBI)NSUN5  55695  NOP2/Sun RNA methyltransferase family member 5
AliasesNOL1; NOL1R; NSUN5A; WBSCR20; 
WBSCR20A; p120; p120(NOL1)
GeneCards (Weizmann)NSUN5
Ensembl hg19 (Hinxton)ENSG00000130305 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130305 [Gene_View]  chr7:73302516-73308867 [Contig_View]  NSUN5 [Vega]
ICGC DataPortalENSG00000130305
TCGA cBioPortalNSUN5
AceView (NCBI)NSUN5
Genatlas (Paris)NSUN5
WikiGenes55695
SOURCE (Princeton)NSUN5
Genetics Home Reference (NIH)NSUN5
Genomic and cartography
GoldenPath hg38 (UCSC)NSUN5  -     chr7:73302516-73308867 -  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NSUN5  -     7q11.23   [Description]    (hg19-Feb_2009)
EnsemblNSUN5 - 7q11.23 [CytoView hg19]  NSUN5 - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBINSUN5 [Mapview hg19]  NSUN5 [Mapview hg38]
OMIM615732   
Gene and transcription
Genbank (Entrez)AF412028 AF420249 AK001129 AK098619 AK125667
RefSeq transcript (Entrez)NM_001168347 NM_001168348 NM_018044 NM_148956
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NSUN5
Cluster EST : UnigeneHs.655217 [ NCBI ]
CGAP (NCI)Hs.655217
Alternative Splicing GalleryENSG00000130305
Gene ExpressionNSUN5 [ NCBI-GEO ]   NSUN5 [ EBI - ARRAY_EXPRESS ]   NSUN5 [ SEEK ]   NSUN5 [ MEM ]
Gene Expression Viewer (FireBrowse)NSUN5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55695
GTEX Portal (Tissue expression)NSUN5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96P11   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96P11  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96P11
Splice isoforms : SwissVarQ96P11
PhosPhoSitePlusQ96P11
Domaine pattern : Prosite (Expaxy)SAM_MT_RSMB_NOP (PS51686)   
Domains : Interpro (EBI)MeTrfase_RsmB/NOP2    RCMT    SAM-dependent_MTases   
Domain families : Pfam (Sanger)Methyltr_RsmB-F (PF01189)   
Domain families : Pfam (NCBI)pfam01189   
Conserved Domain (NCBI)NSUN5
DMDM Disease mutations55695
Blocks (Seattle)NSUN5
PDB (SRS)2B9E   
PDB (PDBSum)2B9E   
PDB (IMB)2B9E   
PDB (RSDB)2B9E   
Structural Biology KnowledgeBase2B9E   
SCOP (Structural Classification of Proteins)2B9E   
CATH (Classification of proteins structures)2B9E   
SuperfamilyQ96P11
Human Protein AtlasENSG00000130305
Peptide AtlasQ96P11
HPRD11678
IPIIPI00164154   IPI00101659   IPI00807684   IPI00973479   IPI00902543   IPI00910694   IPI00926610   
Protein Interaction databases
DIP (DOE-UCLA)Q96P11
IntAct (EBI)Q96P11
FunCoupENSG00000130305
BioGRIDNSUN5
STRING (EMBL)NSUN5
ZODIACNSUN5
Ontologies - Pathways
QuickGOQ96P11
Ontology : AmiGORNA binding  nucleus  nucleolus  nucleolus  RNA methyltransferase activity  S-adenosylmethionine-dependent methyltransferase activity  rRNA base methylation  
Ontology : EGO-EBIRNA binding  nucleus  nucleolus  nucleolus  RNA methyltransferase activity  S-adenosylmethionine-dependent methyltransferase activity  rRNA base methylation  
NDEx NetworkNSUN5
Atlas of Cancer Signalling NetworkNSUN5
Wikipedia pathwaysNSUN5
Orthology - Evolution
OrthoDB55695
GeneTree (enSembl)ENSG00000130305
Phylogenetic Trees/Animal Genes : TreeFamNSUN5
HOVERGENQ96P11
HOGENOMQ96P11
Homologs : HomoloGeneNSUN5
Homology/Alignments : Family Browser (UCSC)NSUN5
Gene fusions - Rearrangements
Fusion : MitelmanNSUN5/BCL7B [7q11.23/7q11.23]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNSUN5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NSUN5
dbVarNSUN5
ClinVarNSUN5
1000_GenomesNSUN5 
Exome Variant ServerNSUN5
ExAC (Exome Aggregation Consortium)NSUN5 (select the gene name)
Genetic variants : HAPMAP55695
Genomic Variants (DGV)NSUN5 [DGVbeta]
DECIPHERNSUN5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNSUN5 
Mutations
ICGC Data PortalNSUN5 
TCGA Data PortalNSUN5 
Broad Tumor PortalNSUN5
OASIS PortalNSUN5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNSUN5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNSUN5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NSUN5
DgiDB (Drug Gene Interaction Database)NSUN5
DoCM (Curated mutations)NSUN5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NSUN5 (select a term)
intoGenNSUN5
Cancer3DNSUN5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615732   
Orphanet
MedgenNSUN5
Genetic Testing Registry NSUN5
NextProtQ96P11 [Medical]
TSGene55695
GENETestsNSUN5
Target ValidationNSUN5
Huge Navigator NSUN5 [HugePedia]
snp3D : Map Gene to Disease55695
BioCentury BCIQNSUN5
ClinGenNSUN5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55695
Chemical/Pharm GKB GenePA134993779
Clinical trialNSUN5
Miscellaneous
canSAR (ICR)NSUN5 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNSUN5
EVEXNSUN5
GoPubMedNSUN5
iHOPNSUN5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:47:31 CEST 2017

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