Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NSUN5P1 (NOP2/Sun RNA methyltransferase family member 5 pseudogene 1)

Identity

Alias_namesNSUN5B
NOL1/NOP2/Sun domain family, member 5B
NOP2/Sun domain family, member 5 pseudogene 1
Alias_symbol (synonym)WBSCR20B
Other alias
HGNC (Hugo) NSUN5P1
LocusID (NCBI) 155400
Atlas_Id 70991
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 75410603 and ends at 75416786 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NSUN5P1 (7q11.23) / FNDC3B (3q26.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NSUN5P1   19146
Cards
Entrez_Gene (NCBI)NSUN5P1  155400  NOP2/Sun RNA methyltransferase family member 5 pseudogene 1
AliasesNSUN5B; WBSCR20B
GeneCards (Weizmann)NSUN5P1
Ensembl hg19 (Hinxton)ENSG00000223705 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000223705 [Gene_View]  chr7:75410603-75416786 [Contig_View]  NSUN5P1 [Vega]
ICGC DataPortalENSG00000223705
TCGA cBioPortalNSUN5P1
AceView (NCBI)NSUN5P1
Genatlas (Paris)NSUN5P1
WikiGenes155400
SOURCE (Princeton)NSUN5P1
Genetics Home Reference (NIH)NSUN5P1
Genomic and cartography
GoldenPath hg38 (UCSC)NSUN5P1  -     chr7:75410603-75416786 +  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NSUN5P1  -     7q11.23   [Description]    (hg19-Feb_2009)
EnsemblNSUN5P1 - 7q11.23 [CytoView hg19]  NSUN5P1 - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBINSUN5P1 [Mapview hg19]  NSUN5P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF416610 AI265798 AK094312 AK126486 AK128374
RefSeq transcript (Entrez)NM_001039575 NM_001039576
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NSUN5P1
Cluster EST : UnigeneHs.436034 [ NCBI ]
CGAP (NCI)Hs.436034
Alternative Splicing GalleryENSG00000223705
Gene ExpressionNSUN5P1 [ NCBI-GEO ]   NSUN5P1 [ EBI - ARRAY_EXPRESS ]   NSUN5P1 [ SEEK ]   NSUN5P1 [ MEM ]
Gene Expression Viewer (FireBrowse)NSUN5P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)155400
GTEX Portal (Tissue expression)NSUN5P1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3KNT7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3KNT7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3KNT7
Splice isoforms : SwissVarQ3KNT7
Catalytic activity : Enzyme2.1.1.- [ Enzyme-Expasy ]   2.1.1.-2.1.1.- [ IntEnz-EBI ]   2.1.1.- [ BRENDA ]   2.1.1.- [ KEGG ]   
PhosPhoSitePlusQ3KNT7
Domaine pattern : Prosite (Expaxy)SAM_MT_RSMB_NOP (PS51686)   
Domains : Interpro (EBI)MeTrfase_RsmB/NOP2    RCMT    SAM-dependent_MTases   
Domain families : Pfam (Sanger)Methyltr_RsmB-F (PF01189)   
Domain families : Pfam (NCBI)pfam01189   
Conserved Domain (NCBI)NSUN5P1
DMDM Disease mutations155400
Blocks (Seattle)NSUN5P1
SuperfamilyQ3KNT7
Human Protein AtlasENSG00000223705
Peptide AtlasQ3KNT7
HPRD15656
IPIIPI00807345   IPI00807411   IPI00167076   
Protein Interaction databases
DIP (DOE-UCLA)Q3KNT7
IntAct (EBI)Q3KNT7
FunCoupENSG00000223705
BioGRIDNSUN5P1
STRING (EMBL)NSUN5P1
ZODIACNSUN5P1
Ontologies - Pathways
QuickGOQ3KNT7
Ontology : AmiGORNA binding  nucleolus  RNA methyltransferase activity  S-adenosylmethionine-dependent methyltransferase activity  rRNA base methylation  
Ontology : EGO-EBIRNA binding  nucleolus  RNA methyltransferase activity  S-adenosylmethionine-dependent methyltransferase activity  rRNA base methylation  
NDEx NetworkNSUN5P1
Atlas of Cancer Signalling NetworkNSUN5P1
Wikipedia pathwaysNSUN5P1
Orthology - Evolution
OrthoDB155400
GeneTree (enSembl)ENSG00000223705
Phylogenetic Trees/Animal Genes : TreeFamNSUN5P1
HOVERGENQ3KNT7
HOGENOMQ3KNT7
Homologs : HomoloGeneNSUN5P1
Homology/Alignments : Family Browser (UCSC)NSUN5P1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNSUN5P1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NSUN5P1
dbVarNSUN5P1
ClinVarNSUN5P1
1000_GenomesNSUN5P1 
Exome Variant ServerNSUN5P1
ExAC (Exome Aggregation Consortium)NSUN5P1 (select the gene name)
Genetic variants : HAPMAP155400
Genomic Variants (DGV)NSUN5P1 [DGVbeta]
DECIPHERNSUN5P1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNSUN5P1 
Mutations
ICGC Data PortalNSUN5P1 
TCGA Data PortalNSUN5P1 
Broad Tumor PortalNSUN5P1
OASIS PortalNSUN5P1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNSUN5P1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNSUN5P1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NSUN5P1
DgiDB (Drug Gene Interaction Database)NSUN5P1
DoCM (Curated mutations)NSUN5P1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NSUN5P1 (select a term)
intoGenNSUN5P1
Cancer3DNSUN5P1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNSUN5P1
Genetic Testing Registry NSUN5P1
NextProtQ3KNT7 [Medical]
TSGene155400
GENETestsNSUN5P1
Huge Navigator NSUN5P1 [HugePedia]
snp3D : Map Gene to Disease155400
BioCentury BCIQNSUN5P1
ClinGenNSUN5P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD155400
Chemical/Pharm GKB GenePA143485559
Clinical trialNSUN5P1
Miscellaneous
canSAR (ICR)NSUN5P1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNSUN5P1
EVEXNSUN5P1
GoPubMedNSUN5P1
iHOPNSUN5P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:45:28 CEST 2017

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