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NSUN5P2 (NOP2/Sun domain family, member 5 pseudogene 2)

Identity

Alias_namesNSUN5C
NOL1/NOP2/Sun domain family, member 5C
NOP2/Sun domain family, member 5 pseudogene 2
Alias_symbol (synonym)WBSCR20C
MGC15057
FLJ11626
DKFZp434K058
NOL1R2
WBSCR20B
Other alias
HGNC (Hugo) NSUN5P2
LocusID (NCBI) 260294
Atlas_Id 70992
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 72418837 and ends at 72425259 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NSUN5P2   16609
Cards
Entrez_Gene (NCBI)NSUN5P2  260294  NOP2/Sun domain family, member 5 pseudogene 2
AliasesNOL1R2; NSUN5C; WBSCR20B; WBSCR20C
GeneCards (Weizmann)NSUN5P2
Ensembl hg19 (Hinxton)ENSG00000106133 [Gene_View]  chr7:72418837-72425259 [Contig_View]  NSUN5P2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000106133 [Gene_View]  chr7:72418837-72425259 [Contig_View]  NSUN5P2 [Vega]
ICGC DataPortalENSG00000106133
TCGA cBioPortalNSUN5P2
AceView (NCBI)NSUN5P2
Genatlas (Paris)NSUN5P2
WikiGenes260294
SOURCE (Princeton)NSUN5P2
Genetics Home Reference (NIH)NSUN5P2
Genomic and cartography
GoldenPath hg19 (UCSC)NSUN5P2  -     chr7:72418837-72425259 -  7q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NSUN5P2  -     7q11.23   [Description]    (hg38-Dec_2013)
EnsemblNSUN5P2 - 7q11.23 [CytoView hg19]  NSUN5P2 - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBINSUN5P2 [Mapview hg19]  NSUN5P2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF416611 AF420250 AK021688 AK292107 AK303622
RefSeq transcript (Entrez)NM_001039487 NM_148936 NM_148980
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)NSUN5P2
Cluster EST : UnigeneHs.655217 [ NCBI ]
CGAP (NCI)Hs.655217
Alternative Splicing GalleryENSG00000106133
Gene ExpressionNSUN5P2 [ NCBI-GEO ]   NSUN5P2 [ EBI - ARRAY_EXPRESS ]   NSUN5P2 [ SEEK ]   NSUN5P2 [ MEM ]
Gene Expression Viewer (FireBrowse)NSUN5P2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)260294
GTEX Portal (Tissue expression)NSUN5P2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ63ZY6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ63ZY6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ63ZY6
Splice isoforms : SwissVarQ63ZY6
Catalytic activity : Enzyme2.1.1.- [ Enzyme-Expasy ]   2.1.1.-2.1.1.- [ IntEnz-EBI ]   2.1.1.- [ BRENDA ]   2.1.1.- [ KEGG ]   
PhosPhoSitePlusQ63ZY6
Domaine pattern : Prosite (Expaxy)SAM_MT_RSMB_NOP (PS51686)   
Domains : Interpro (EBI)MeTrfase_RsmB/NOP2    RCMT    SAM-dependent_MTases   
Domain families : Pfam (Sanger)Nol1_Nop2_Fmu (PF01189)   
Domain families : Pfam (NCBI)pfam01189   
Conserved Domain (NCBI)NSUN5P2
DMDM Disease mutations260294
Blocks (Seattle)NSUN5P2
SuperfamilyQ63ZY6
Human Protein AtlasENSG00000106133
Peptide AtlasQ63ZY6
HPRD15657
IPIIPI00470560   IPI00807644   IPI00807665   IPI00167075   IPI00807349   
Protein Interaction databases
DIP (DOE-UCLA)Q63ZY6
IntAct (EBI)Q63ZY6
FunCoupENSG00000106133
BioGRIDNSUN5P2
STRING (EMBL)NSUN5P2
ZODIACNSUN5P2
Ontologies - Pathways
QuickGOQ63ZY6
Ontology : AmiGORNA binding  methyltransferase activity  methylation  
Ontology : EGO-EBIRNA binding  methyltransferase activity  methylation  
NDEx NetworkNSUN5P2
Atlas of Cancer Signalling NetworkNSUN5P2
Wikipedia pathwaysNSUN5P2
Orthology - Evolution
OrthoDB260294
GeneTree (enSembl)ENSG00000106133
Phylogenetic Trees/Animal Genes : TreeFamNSUN5P2
HOVERGENQ63ZY6
HOGENOMQ63ZY6
Homologs : HomoloGeneNSUN5P2
Homology/Alignments : Family Browser (UCSC)NSUN5P2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNSUN5P2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NSUN5P2
dbVarNSUN5P2
ClinVarNSUN5P2
1000_GenomesNSUN5P2 
Exome Variant ServerNSUN5P2
ExAC (Exome Aggregation Consortium)NSUN5P2 (select the gene name)
Genetic variants : HAPMAP260294
Genomic Variants (DGV)NSUN5P2 [DGVbeta]
DECIPHER (Syndromes)7:72418837-72425259  ENSG00000106133
CONAN: Copy Number AnalysisNSUN5P2 
Mutations
ICGC Data PortalNSUN5P2 
TCGA Data PortalNSUN5P2 
Broad Tumor PortalNSUN5P2
OASIS PortalNSUN5P2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNSUN5P2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNSUN5P2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NSUN5P2
DgiDB (Drug Gene Interaction Database)NSUN5P2
DoCM (Curated mutations)NSUN5P2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NSUN5P2 (select a term)
intoGenNSUN5P2
Cancer3DNSUN5P2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNSUN5P2
Genetic Testing Registry NSUN5P2
NextProtQ63ZY6 [Medical]
TSGene260294
GENETestsNSUN5P2
Huge Navigator NSUN5P2 [HugePedia]
snp3D : Map Gene to Disease260294
BioCentury BCIQNSUN5P2
ClinGenNSUN5P2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD260294
Chemical/Pharm GKB GenePA143485560
Clinical trialNSUN5P2
Miscellaneous
canSAR (ICR)NSUN5P2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNSUN5P2
EVEXNSUN5P2
GoPubMedNSUN5P2
iHOPNSUN5P2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:35:26 CET 2017

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