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NSUN6 (NOP2/Sun RNA methyltransferase family member 6)

Identity

Alias_namesNOPD1
ARL5B-AS1
NOL1/NOP2/Sun domain family, member 6
ARL5B antisense RNA 1
NOP2/Sun domain family, member 6
Alias_symbol (synonym)FLJ23743
Other alias4933414E04Rik
HGNC (Hugo) NSUN6
LocusID (NCBI) 221078
Atlas_Id 70993
Location 10p12.31  [Link to chromosome band 10p12]
Location_base_pair Starts at 18545207 and ends at 18651637 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NSUN6   23529
Cards
Entrez_Gene (NCBI)NSUN6  221078  NOP2/Sun RNA methyltransferase family member 6
Aliases4933414E04Rik; ARL5B-AS1; NOPD1
GeneCards (Weizmann)NSUN6
Ensembl hg19 (Hinxton)ENSG00000241058 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000241058 [Gene_View]  chr10:18545207-18651637 [Contig_View]  NSUN6 [Vega]
ICGC DataPortalENSG00000241058
TCGA cBioPortalNSUN6
AceView (NCBI)NSUN6
Genatlas (Paris)NSUN6
WikiGenes221078
SOURCE (Princeton)NSUN6
Genetics Home Reference (NIH)NSUN6
Genomic and cartography
GoldenPath hg38 (UCSC)NSUN6  -     chr10:18545207-18651637 -  10p12.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NSUN6  -     10p12.31   [Description]    (hg19-Feb_2009)
EnsemblNSUN6 - 10p12.31 [CytoView hg19]  NSUN6 - 10p12.31 [CytoView hg38]
Mapping of homologs : NCBINSUN6 [Mapview hg19]  NSUN6 [Mapview hg38]
OMIM617199   
Gene and transcription
Genbank (Entrez)AA347409 AI689762 AK074323 AL600949 AL698095
RefSeq transcript (Entrez)NM_001351115 NM_001351116 NM_001351117 NM_001351118 NM_182543
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NSUN6
Cluster EST : UnigeneHs.731893 [ NCBI ]
CGAP (NCI)Hs.731893
Alternative Splicing GalleryENSG00000241058
Gene ExpressionNSUN6 [ NCBI-GEO ]   NSUN6 [ EBI - ARRAY_EXPRESS ]   NSUN6 [ SEEK ]   NSUN6 [ MEM ]
Gene Expression Viewer (FireBrowse)NSUN6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221078
GTEX Portal (Tissue expression)NSUN6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TEA1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TEA1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TEA1
Splice isoforms : SwissVarQ8TEA1
Catalytic activity : Enzyme2.1.1.- [ Enzyme-Expasy ]   2.1.1.-2.1.1.- [ IntEnz-EBI ]   2.1.1.- [ BRENDA ]   2.1.1.- [ KEGG ]   
PhosPhoSitePlusQ8TEA1
Domaine pattern : Prosite (Expaxy)NOL1_NOP2_SUN (PS01153)    PUA (PS50890)    SAM_MT_RSMB_NOP (PS51686)   
Domains : Interpro (EBI)Fmu/NOL1/Nop2p_CS    MeTrfase_RsmB/NOP2    PUA    PUA-like_domain    RCMT    SAM-dependent_MTases   
Domain families : Pfam (Sanger)Methyltr_RsmB-F (PF01189)   
Domain families : Pfam (NCBI)pfam01189   
Conserved Domain (NCBI)NSUN6
DMDM Disease mutations221078
Blocks (Seattle)NSUN6
SuperfamilyQ8TEA1
Human Protein AtlasENSG00000241058
Peptide AtlasQ8TEA1
HPRD14843
IPIIPI00152688   
Protein Interaction databases
DIP (DOE-UCLA)Q8TEA1
IntAct (EBI)Q8TEA1
FunCoupENSG00000241058
BioGRIDNSUN6
STRING (EMBL)NSUN6
ZODIACNSUN6
Ontologies - Pathways
QuickGOQ8TEA1
Ontology : AmiGOtRNA binding  cytoplasm  cytosol  tRNA modification  tRNA (cytosine-5-)-methyltransferase activity  tRNA (cytosine-5-)-methyltransferase activity  tRNA methylation  
Ontology : EGO-EBItRNA binding  cytoplasm  cytosol  tRNA modification  tRNA (cytosine-5-)-methyltransferase activity  tRNA (cytosine-5-)-methyltransferase activity  tRNA methylation  
NDEx NetworkNSUN6
Atlas of Cancer Signalling NetworkNSUN6
Wikipedia pathwaysNSUN6
Orthology - Evolution
OrthoDB221078
GeneTree (enSembl)ENSG00000241058
Phylogenetic Trees/Animal Genes : TreeFamNSUN6
HOVERGENQ8TEA1
HOGENOMQ8TEA1
Homologs : HomoloGeneNSUN6
Homology/Alignments : Family Browser (UCSC)NSUN6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNSUN6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NSUN6
dbVarNSUN6
ClinVarNSUN6
1000_GenomesNSUN6 
Exome Variant ServerNSUN6
ExAC (Exome Aggregation Consortium)NSUN6 (select the gene name)
Genetic variants : HAPMAP221078
Genomic Variants (DGV)NSUN6 [DGVbeta]
DECIPHERNSUN6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNSUN6 
Mutations
ICGC Data PortalNSUN6 
TCGA Data PortalNSUN6 
Broad Tumor PortalNSUN6
OASIS PortalNSUN6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNSUN6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNSUN6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NSUN6
DgiDB (Drug Gene Interaction Database)NSUN6
DoCM (Curated mutations)NSUN6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NSUN6 (select a term)
intoGenNSUN6
Cancer3DNSUN6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617199   
Orphanet
MedgenNSUN6
Genetic Testing Registry NSUN6
NextProtQ8TEA1 [Medical]
TSGene221078
GENETestsNSUN6
Target ValidationNSUN6
Huge Navigator NSUN6 [HugePedia]
snp3D : Map Gene to Disease221078
BioCentury BCIQNSUN6
ClinGenNSUN6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221078
Chemical/Pharm GKB GenePA134986220
Clinical trialNSUN6
Miscellaneous
canSAR (ICR)NSUN6 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNSUN6
EVEXNSUN6
GoPubMedNSUN6
iHOPNSUN6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:33:09 CEST 2017

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