Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NT5C1A (5'-nucleotidase, cytosolic IA)

Identity

Alias_symbol (synonym)CN-I
CN-IA
CN1A
CN1
MGC119199
MGC119201
Other aliasCNI
HGNC (Hugo) NT5C1A
LocusID (NCBI) 84618
Atlas_Id 70996
Location 1p34.2  [Link to chromosome band 1p34]
Location_base_pair Starts at 40124793 and ends at 40137710 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NT5C1A   17819
Cards
Entrez_Gene (NCBI)NT5C1A  84618  5'-nucleotidase, cytosolic IA
AliasesCN-I; CN-IA; CN1; CN1A; 
CNI
GeneCards (Weizmann)NT5C1A
Ensembl hg19 (Hinxton)ENSG00000116981 [Gene_View]  chr1:40124793-40137710 [Contig_View]  NT5C1A [Vega]
Ensembl hg38 (Hinxton)ENSG00000116981 [Gene_View]  chr1:40124793-40137710 [Contig_View]  NT5C1A [Vega]
ICGC DataPortalENSG00000116981
TCGA cBioPortalNT5C1A
AceView (NCBI)NT5C1A
Genatlas (Paris)NT5C1A
WikiGenes84618
SOURCE (Princeton)NT5C1A
Genetics Home Reference (NIH)NT5C1A
Genomic and cartography
GoldenPath hg19 (UCSC)NT5C1A  -     chr1:40124793-40137710 -  1p34.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NT5C1A  -     1p34.2   [Description]    (hg38-Dec_2013)
EnsemblNT5C1A - 1p34.2 [CytoView hg19]  NT5C1A - 1p34.2 [CytoView hg38]
Mapping of homologs : NCBINT5C1A [Mapview hg19]  NT5C1A [Mapview hg38]
OMIM610525   
Gene and transcription
Genbank (Entrez)AF331801 AY028778 BC103879 BC103880
RefSeq transcript (Entrez)NM_032526
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)NT5C1A
Cluster EST : UnigeneHs.307006 [ NCBI ]
CGAP (NCI)Hs.307006
Alternative Splicing GalleryENSG00000116981
Gene ExpressionNT5C1A [ NCBI-GEO ]   NT5C1A [ EBI - ARRAY_EXPRESS ]   NT5C1A [ SEEK ]   NT5C1A [ MEM ]
Gene Expression Viewer (FireBrowse)NT5C1A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84618
GTEX Portal (Tissue expression)NT5C1A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXI3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXI3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXI3
Splice isoforms : SwissVarQ9BXI3
Catalytic activity : Enzyme3.1.3.5 [ Enzyme-Expasy ]   3.1.3.53.1.3.5 [ IntEnz-EBI ]   3.1.3.5 [ BRENDA ]   3.1.3.5 [ KEGG ]   
PhosPhoSitePlusQ9BXI3
Domains : Interpro (EBI)5-nucleotidase   
Domain families : Pfam (Sanger)5-nucleotidase (PF06189)   
Domain families : Pfam (NCBI)pfam06189   
Conserved Domain (NCBI)NT5C1A
DMDM Disease mutations84618
Blocks (Seattle)NT5C1A
SuperfamilyQ9BXI3
Human Protein AtlasENSG00000116981
Peptide AtlasQ9BXI3
HPRD14844
IPIIPI00000146   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXI3
IntAct (EBI)Q9BXI3
FunCoupENSG00000116981
BioGRIDNT5C1A
STRING (EMBL)NT5C1A
ZODIACNT5C1A
Ontologies - Pathways
QuickGOQ9BXI3
Ontology : AmiGOnucleotide binding  magnesium ion binding  cytosol  cytosol  purine nucleobase metabolic process  purine nucleotide catabolic process  pyrimidine nucleobase metabolic process  5'-nucleotidase activity  5'-nucleotidase activity  nucleoside metabolic process  purine nucleoside monophosphate catabolic process  dephosphorylation  dephosphorylation  dephosphorylation  small molecule metabolic process  adenosine metabolic process  pyrimidine nucleoside catabolic process  nucleobase-containing small molecule metabolic process  
Ontology : EGO-EBInucleotide binding  magnesium ion binding  cytosol  cytosol  purine nucleobase metabolic process  purine nucleotide catabolic process  pyrimidine nucleobase metabolic process  5'-nucleotidase activity  5'-nucleotidase activity  nucleoside metabolic process  purine nucleoside monophosphate catabolic process  dephosphorylation  dephosphorylation  dephosphorylation  small molecule metabolic process  adenosine metabolic process  pyrimidine nucleoside catabolic process  nucleobase-containing small molecule metabolic process  
Pathways : KEGGPurine metabolism    Pyrimidine metabolism    Nicotinate and nicotinamide metabolism   
NDEx NetworkNT5C1A
Atlas of Cancer Signalling NetworkNT5C1A
Wikipedia pathwaysNT5C1A
Orthology - Evolution
OrthoDB84618
GeneTree (enSembl)ENSG00000116981
Phylogenetic Trees/Animal Genes : TreeFamNT5C1A
HOVERGENQ9BXI3
HOGENOMQ9BXI3
Homologs : HomoloGeneNT5C1A
Homology/Alignments : Family Browser (UCSC)NT5C1A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNT5C1A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NT5C1A
dbVarNT5C1A
ClinVarNT5C1A
1000_GenomesNT5C1A 
Exome Variant ServerNT5C1A
ExAC (Exome Aggregation Consortium)NT5C1A (select the gene name)
Genetic variants : HAPMAP84618
Genomic Variants (DGV)NT5C1A [DGVbeta]
DECIPHER (Syndromes)1:40124793-40137710  ENSG00000116981
CONAN: Copy Number AnalysisNT5C1A 
Mutations
ICGC Data PortalNT5C1A 
TCGA Data PortalNT5C1A 
Broad Tumor PortalNT5C1A
OASIS PortalNT5C1A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNT5C1A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNT5C1A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NT5C1A
DgiDB (Drug Gene Interaction Database)NT5C1A
DoCM (Curated mutations)NT5C1A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NT5C1A (select a term)
intoGenNT5C1A
Cancer3DNT5C1A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610525   
Orphanet
MedgenNT5C1A
Genetic Testing Registry NT5C1A
NextProtQ9BXI3 [Medical]
TSGene84618
GENETestsNT5C1A
Huge Navigator NT5C1A [HugePedia]
snp3D : Map Gene to Disease84618
BioCentury BCIQNT5C1A
ClinGenNT5C1A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84618
Chemical/Pharm GKB GenePA31799
Clinical trialNT5C1A
Miscellaneous
canSAR (ICR)NT5C1A (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNT5C1A
EVEXNT5C1A
GoPubMedNT5C1A
iHOPNT5C1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:35:27 CET 2017

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