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NT5C3B (5'-nucleotidase, cytosolic IIIB)

Identity

Alias_namesNT5C3L
5'-nucleotidase, cytosolic III-like
Alias_symbol (synonym)MGC20781
cN-IIIB
Other alias
HGNC (Hugo) NT5C3B
LocusID (NCBI) 115024
Atlas_Id 70999
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41825082 and ends at 41836271 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NT5C3B   28300
Cards
Entrez_Gene (NCBI)NT5C3B  115024  5'-nucleotidase, cytosolic IIIB
AliasesNT5C3L; cN-IIIB
GeneCards (Weizmann)NT5C3B
Ensembl hg19 (Hinxton)ENSG00000141698 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141698 [Gene_View]  chr17:41825082-41836271 [Contig_View]  NT5C3B [Vega]
ICGC DataPortalENSG00000141698
TCGA cBioPortalNT5C3B
AceView (NCBI)NT5C3B
Genatlas (Paris)NT5C3B
WikiGenes115024
SOURCE (Princeton)NT5C3B
Genetics Home Reference (NIH)NT5C3B
Genomic and cartography
GoldenPath hg38 (UCSC)NT5C3B  -     chr17:41825082-41836271 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NT5C3B  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblNT5C3B - 17q21.2 [CytoView hg19]  NT5C3B - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBINT5C3B [Mapview hg19]  NT5C3B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA730137 BC013742 BC014132 BC016971 BC067788
RefSeq transcript (Entrez)NM_052935
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NT5C3B
Cluster EST : UnigeneHs.237536 [ NCBI ]
CGAP (NCI)Hs.237536
Alternative Splicing GalleryENSG00000141698
Gene ExpressionNT5C3B [ NCBI-GEO ]   NT5C3B [ EBI - ARRAY_EXPRESS ]   NT5C3B [ SEEK ]   NT5C3B [ MEM ]
Gene Expression Viewer (FireBrowse)NT5C3B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115024
GTEX Portal (Tissue expression)NT5C3B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969T7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969T7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969T7
Splice isoforms : SwissVarQ969T7
PhosPhoSitePlusQ969T7
Domains : Interpro (EBI)HAD-like_dom    Pyrimidine_nucleotidase_eu   
Domain families : Pfam (Sanger)UMPH-1 (PF05822)   
Domain families : Pfam (NCBI)pfam05822   
Conserved Domain (NCBI)NT5C3B
DMDM Disease mutations115024
Blocks (Seattle)NT5C3B
SuperfamilyQ969T7
Human Protein AtlasENSG00000141698
Peptide AtlasQ969T7
HPRD14475
IPIIPI00056505   IPI00972933   IPI00790440   IPI00789033   IPI00791008   IPI00974212   IPI01012194   IPI00973768   
Protein Interaction databases
DIP (DOE-UCLA)Q969T7
IntAct (EBI)Q969T7
FunCoupENSG00000141698
BioGRIDNT5C3B
STRING (EMBL)NT5C3B
ZODIACNT5C3B
Ontologies - Pathways
QuickGOQ969T7
Ontology : AmiGOnucleotide binding  magnesium ion binding  protein binding  cytosol  5'-nucleotidase activity  nucleotide metabolic process  dephosphorylation  exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay  
Ontology : EGO-EBInucleotide binding  magnesium ion binding  protein binding  cytosol  5'-nucleotidase activity  nucleotide metabolic process  dephosphorylation  exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay  
Pathways : KEGGPurine metabolism    Pyrimidine metabolism    Nicotinate and nicotinamide metabolism   
NDEx NetworkNT5C3B
Atlas of Cancer Signalling NetworkNT5C3B
Wikipedia pathwaysNT5C3B
Orthology - Evolution
OrthoDB115024
GeneTree (enSembl)ENSG00000141698
Phylogenetic Trees/Animal Genes : TreeFamNT5C3B
HOVERGENQ969T7
HOGENOMQ969T7
Homologs : HomoloGeneNT5C3B
Homology/Alignments : Family Browser (UCSC)NT5C3B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNT5C3B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NT5C3B
dbVarNT5C3B
ClinVarNT5C3B
1000_GenomesNT5C3B 
Exome Variant ServerNT5C3B
ExAC (Exome Aggregation Consortium)NT5C3B (select the gene name)
Genetic variants : HAPMAP115024
Genomic Variants (DGV)NT5C3B [DGVbeta]
DECIPHERNT5C3B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNT5C3B 
Mutations
ICGC Data PortalNT5C3B 
TCGA Data PortalNT5C3B 
Broad Tumor PortalNT5C3B
OASIS PortalNT5C3B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNT5C3B
BioMutasearch NT5C3B
DgiDB (Drug Gene Interaction Database)NT5C3B
DoCM (Curated mutations)NT5C3B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NT5C3B (select a term)
intoGenNT5C3B
Cancer3DNT5C3B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNT5C3B
Genetic Testing Registry NT5C3B
NextProtQ969T7 [Medical]
TSGene115024
GENETestsNT5C3B
Target ValidationNT5C3B
Huge Navigator NT5C3B [HugePedia]
snp3D : Map Gene to Disease115024
BioCentury BCIQNT5C3B
ClinGenNT5C3B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD115024
Chemical/Pharm GKB GenePA142671245
Clinical trialNT5C3B
Miscellaneous
canSAR (ICR)NT5C3B (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNT5C3B
EVEXNT5C3B
GoPubMedNT5C3B
iHOPNT5C3B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:33:10 CEST 2017

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