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NT5DC1 (5'-nucleotidase domain containing 1)

Identity

Alias_namesNT5C2L1
5'-nucleotidase, cytosolic II-like 1
Alias_symbol (synonym)dJ486I3.1
MGC24302
Other aliasC6orf200
LP2642
HGNC (Hugo) NT5DC1
LocusID (NCBI) 221294
Atlas_Id 71000
Location 6q22.1  [Link to chromosome band 6q22]
Location_base_pair Starts at 116100836 and ends at 116245690 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FRK (6q22.1) / NT5DC1 (6q22.1)NT5DC1 (6q22.1) / FAM160B1 (10q25.3)NT5DC1 (6q22.1) / FRK (6q22.1)
NT5DC1 (6q22.1) / NT5DC1 (6q22.1)NT5DC1 (6q22.1) / WDR43 (2p23.2)NT5DC1 (6q22.1) / WDR59 (16q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NT5DC1   21556
Cards
Entrez_Gene (NCBI)NT5DC1  221294  5'-nucleotidase domain containing 1
AliasesC6orf200; LP2642; NT5C2L1
GeneCards (Weizmann)NT5DC1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr6:116100836-116245690 [Contig_View]  NT5DC1 [Vega]
TCGA cBioPortalNT5DC1
AceView (NCBI)NT5DC1
Genatlas (Paris)NT5DC1
WikiGenes221294
SOURCE (Princeton)NT5DC1
Genetics Home Reference (NIH)NT5DC1
Genomic and cartography
GoldenPath hg38 (UCSC)NT5DC1  -     chr6:116100836-116245690 +  6q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NT5DC1  -     6q22.1   [Description]    (hg19-Feb_2009)
EnsemblNT5DC1 - 6q22.1 [CytoView hg19]  NT5DC1 - 6q22.1 [CytoView hg38]
Mapping of homologs : NCBINT5DC1 [Mapview hg19]  NT5DC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF245044 AK090918 AK290408 AK308337 AY203935
RefSeq transcript (Entrez)NM_152729
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NT5DC1
Cluster EST : UnigeneHs.520341 [ NCBI ]
CGAP (NCI)Hs.520341
Gene ExpressionNT5DC1 [ NCBI-GEO ]   NT5DC1 [ EBI - ARRAY_EXPRESS ]   NT5DC1 [ SEEK ]   NT5DC1 [ MEM ]
Gene Expression Viewer (FireBrowse)NT5DC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221294
GTEX Portal (Tissue expression)NT5DC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TFE4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TFE4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TFE4
Splice isoforms : SwissVarQ5TFE4
PhosPhoSitePlusQ5TFE4
Domains : Interpro (EBI)HAD-like_dom    HAD-SF_hydro_IG_5-nucl   
Domain families : Pfam (Sanger)5_nucleotid (PF05761)   
Domain families : Pfam (NCBI)pfam05761   
Conserved Domain (NCBI)NT5DC1
DMDM Disease mutations221294
Blocks (Seattle)NT5DC1
SuperfamilyQ5TFE4
Peptide AtlasQ5TFE4
HPRD14845
IPIIPI00177965   IPI00903275   IPI00000135   IPI00747095   IPI00514986   IPI00514738   
Protein Interaction databases
DIP (DOE-UCLA)Q5TFE4
IntAct (EBI)Q5TFE4
BioGRIDNT5DC1
STRING (EMBL)NT5DC1
ZODIACNT5DC1
Ontologies - Pathways
QuickGOQ5TFE4
Ontology : AmiGO5'-nucleotidase activity  dephosphorylation  metal ion binding  
Ontology : EGO-EBI5'-nucleotidase activity  dephosphorylation  metal ion binding  
NDEx NetworkNT5DC1
Atlas of Cancer Signalling NetworkNT5DC1
Wikipedia pathwaysNT5DC1
Orthology - Evolution
OrthoDB221294
Phylogenetic Trees/Animal Genes : TreeFamNT5DC1
HOVERGENQ5TFE4
HOGENOMQ5TFE4
Homologs : HomoloGeneNT5DC1
Homology/Alignments : Family Browser (UCSC)NT5DC1
Gene fusions - Rearrangements
Tumor Fusion PortalNT5DC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNT5DC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NT5DC1
dbVarNT5DC1
ClinVarNT5DC1
1000_GenomesNT5DC1 
Exome Variant ServerNT5DC1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP221294
Genomic Variants (DGV)NT5DC1 [DGVbeta]
DECIPHERNT5DC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNT5DC1 
Mutations
ICGC Data PortalNT5DC1 
TCGA Data PortalNT5DC1 
Broad Tumor PortalNT5DC1
OASIS PortalNT5DC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNT5DC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNT5DC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NT5DC1
DgiDB (Drug Gene Interaction Database)NT5DC1
DoCM (Curated mutations)NT5DC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NT5DC1 (select a term)
intoGenNT5DC1
Cancer3DNT5DC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETNT5DC1
MedgenNT5DC1
Genetic Testing Registry NT5DC1
NextProtQ5TFE4 [Medical]
TSGene221294
GENETestsNT5DC1
Target ValidationNT5DC1
Huge Navigator NT5DC1 [HugePedia]
snp3D : Map Gene to Disease221294
BioCentury BCIQNT5DC1
ClinGenNT5DC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221294
Chemical/Pharm GKB GenePA134892962
Clinical trialNT5DC1
Miscellaneous
canSAR (ICR)NT5DC1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNT5DC1
EVEXNT5DC1
GoPubMedNT5DC1
iHOPNT5DC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:14:49 CET 2017

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