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NT5DC2 (5'-nucleotidase domain containing 2)

Identity

Alias_symbol (synonym)FLJ12442
Other alias-
HGNC (Hugo) NT5DC2
LocusID (NCBI) 64943
Atlas_Id 71001
Location 3p21.1  [Link to chromosome band 3p21]
Location_base_pair Starts at 52524369 and ends at 52533777 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GNAI2 (3p21.31) / NT5DC2 (3p21.1)NT5DC2 (3p21.1) / STAB1 (3p21.1)WDR82 (3p21.2) / NT5DC2 (3p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NT5DC2   25717
Cards
Entrez_Gene (NCBI)NT5DC2  64943  5'-nucleotidase domain containing 2
Aliases
GeneCards (Weizmann)NT5DC2
Ensembl hg19 (Hinxton)ENSG00000168268 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168268 [Gene_View]  chr3:52524369-52533777 [Contig_View]  NT5DC2 [Vega]
ICGC DataPortalENSG00000168268
TCGA cBioPortalNT5DC2
AceView (NCBI)NT5DC2
Genatlas (Paris)NT5DC2
WikiGenes64943
SOURCE (Princeton)NT5DC2
Genetics Home Reference (NIH)NT5DC2
Genomic and cartography
GoldenPath hg38 (UCSC)NT5DC2  -     chr3:52524369-52533777 -  3p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NT5DC2  -     3p21.1   [Description]    (hg19-Feb_2009)
EnsemblNT5DC2 - 3p21.1 [CytoView hg19]  NT5DC2 - 3p21.1 [CytoView hg38]
Mapping of homologs : NCBINT5DC2 [Mapview hg19]  NT5DC2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF131781 AK022504 AK023995 AK092469 AW510639
RefSeq transcript (Entrez)NM_001134231 NM_022908
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NT5DC2
Cluster EST : UnigeneHs.84753 [ NCBI ]
CGAP (NCI)Hs.84753
Alternative Splicing GalleryENSG00000168268
Gene ExpressionNT5DC2 [ NCBI-GEO ]   NT5DC2 [ EBI - ARRAY_EXPRESS ]   NT5DC2 [ SEEK ]   NT5DC2 [ MEM ]
Gene Expression Viewer (FireBrowse)NT5DC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64943
GTEX Portal (Tissue expression)NT5DC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H857   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H857  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H857
Splice isoforms : SwissVarQ9H857
PhosPhoSitePlusQ9H857
Domains : Interpro (EBI)HAD-like_dom    HAD-SF_hydro_IG_5-nucl    Pur_nucleotidase   
Domain families : Pfam (Sanger)5_nucleotid (PF05761)   
Domain families : Pfam (NCBI)pfam05761   
Conserved Domain (NCBI)NT5DC2
DMDM Disease mutations64943
Blocks (Seattle)NT5DC2
SuperfamilyQ9H857
Human Protein AtlasENSG00000168268
Peptide AtlasQ9H857
HPRD07770
IPIIPI00009662   IPI00783682   IPI00945361   IPI00945729   IPI00797435   IPI00947366   IPI00947528   IPI00783118   
Protein Interaction databases
DIP (DOE-UCLA)Q9H857
IntAct (EBI)Q9H857
FunCoupENSG00000168268
BioGRIDNT5DC2
STRING (EMBL)NT5DC2
ZODIACNT5DC2
Ontologies - Pathways
QuickGOQ9H857
Ontology : AmiGO5'-nucleotidase activity  dephosphorylation  metal ion binding  
Ontology : EGO-EBI5'-nucleotidase activity  dephosphorylation  metal ion binding  
NDEx NetworkNT5DC2
Atlas of Cancer Signalling NetworkNT5DC2
Wikipedia pathwaysNT5DC2
Orthology - Evolution
OrthoDB64943
GeneTree (enSembl)ENSG00000168268
Phylogenetic Trees/Animal Genes : TreeFamNT5DC2
HOVERGENQ9H857
HOGENOMQ9H857
Homologs : HomoloGeneNT5DC2
Homology/Alignments : Family Browser (UCSC)NT5DC2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNT5DC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NT5DC2
dbVarNT5DC2
ClinVarNT5DC2
1000_GenomesNT5DC2 
Exome Variant ServerNT5DC2
ExAC (Exome Aggregation Consortium)NT5DC2 (select the gene name)
Genetic variants : HAPMAP64943
Genomic Variants (DGV)NT5DC2 [DGVbeta]
DECIPHERNT5DC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNT5DC2 
Mutations
ICGC Data PortalNT5DC2 
TCGA Data PortalNT5DC2 
Broad Tumor PortalNT5DC2
OASIS PortalNT5DC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNT5DC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNT5DC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NT5DC2
DgiDB (Drug Gene Interaction Database)NT5DC2
DoCM (Curated mutations)NT5DC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NT5DC2 (select a term)
intoGenNT5DC2
Cancer3DNT5DC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNT5DC2
Genetic Testing Registry NT5DC2
NextProtQ9H857 [Medical]
TSGene64943
GENETestsNT5DC2
Target ValidationNT5DC2
Huge Navigator NT5DC2 [HugePedia]
snp3D : Map Gene to Disease64943
BioCentury BCIQNT5DC2
ClinGenNT5DC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64943
Chemical/Pharm GKB GenePA143485561
Clinical trialNT5DC2
Miscellaneous
canSAR (ICR)NT5DC2 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNT5DC2
EVEXNT5DC2
GoPubMedNT5DC2
iHOPNT5DC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:33:11 CEST 2017

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