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NT5DC4 (5'-nucleotidase domain containing 4)

Identity

Other alias-
HGNC (Hugo) NT5DC4
LocusID (NCBI) 284958
Atlas_Id 71002
Location 2q14.1  [Link to chromosome band 2q14]
Location_base_pair Starts at 112721486 and ends at 112742877 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CKAP2L (2q13) / NT5DC4 (2q13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NT5DC4   27678
Cards
Entrez_Gene (NCBI)NT5DC4  284958  5'-nucleotidase domain containing 4
Aliases
GeneCards (Weizmann)NT5DC4
Ensembl hg19 (Hinxton)ENSG00000144130 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144130 [Gene_View]  chr2:112721486-112742877 [Contig_View]  NT5DC4 [Vega]
ICGC DataPortalENSG00000144130
TCGA cBioPortalNT5DC4
AceView (NCBI)NT5DC4
Genatlas (Paris)NT5DC4
WikiGenes284958
SOURCE (Princeton)NT5DC4
Genetics Home Reference (NIH)NT5DC4
Genomic and cartography
GoldenPath hg38 (UCSC)NT5DC4  -     chr2:112721486-112742877 +  2q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NT5DC4  -     2q14.1   [Description]    (hg19-Feb_2009)
EnsemblNT5DC4 - 2q14.1 [CytoView hg19]  NT5DC4 - 2q14.1 [CytoView hg38]
Mapping of homologs : NCBINT5DC4 [Mapview hg19]  NT5DC4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092780 BC041437
RefSeq transcript (Entrez)NM_001350494
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NT5DC4
Cluster EST : UnigeneHs.589714 [ NCBI ]
CGAP (NCI)Hs.589714
Alternative Splicing GalleryENSG00000144130
Gene ExpressionNT5DC4 [ NCBI-GEO ]   NT5DC4 [ EBI - ARRAY_EXPRESS ]   NT5DC4 [ SEEK ]   NT5DC4 [ MEM ]
Gene Expression Viewer (FireBrowse)NT5DC4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284958
GTEX Portal (Tissue expression)NT5DC4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YG4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86YG4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86YG4
Splice isoforms : SwissVarQ86YG4
PhosPhoSitePlusQ86YG4
Domains : Interpro (EBI)HAD-like_dom    HAD-SF_hydro_IG_5-nucl    Pur_nucleotidase   
Domain families : Pfam (Sanger)5_nucleotid (PF05761)   
Domain families : Pfam (NCBI)pfam05761   
Conserved Domain (NCBI)NT5DC4
DMDM Disease mutations284958
Blocks (Seattle)NT5DC4
SuperfamilyQ86YG4
Human Protein AtlasENSG00000144130
Peptide AtlasQ86YG4
IPIIPI00886897   IPI00888457   
Protein Interaction databases
DIP (DOE-UCLA)Q86YG4
IntAct (EBI)Q86YG4
FunCoupENSG00000144130
BioGRIDNT5DC4
STRING (EMBL)NT5DC4
ZODIACNT5DC4
Ontologies - Pathways
QuickGOQ86YG4
Ontology : AmiGO5'-nucleotidase activity  dephosphorylation  metal ion binding  
Ontology : EGO-EBI5'-nucleotidase activity  dephosphorylation  metal ion binding  
NDEx NetworkNT5DC4
Atlas of Cancer Signalling NetworkNT5DC4
Wikipedia pathwaysNT5DC4
Orthology - Evolution
OrthoDB284958
GeneTree (enSembl)ENSG00000144130
Phylogenetic Trees/Animal Genes : TreeFamNT5DC4
HOVERGENQ86YG4
HOGENOMQ86YG4
Homologs : HomoloGeneNT5DC4
Homology/Alignments : Family Browser (UCSC)NT5DC4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNT5DC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NT5DC4
dbVarNT5DC4
ClinVarNT5DC4
1000_GenomesNT5DC4 
Exome Variant ServerNT5DC4
ExAC (Exome Aggregation Consortium)NT5DC4 (select the gene name)
Genetic variants : HAPMAP284958
Genomic Variants (DGV)NT5DC4 [DGVbeta]
DECIPHERNT5DC4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNT5DC4 
Mutations
ICGC Data PortalNT5DC4 
TCGA Data PortalNT5DC4 
Broad Tumor PortalNT5DC4
OASIS PortalNT5DC4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNT5DC4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NT5DC4
DgiDB (Drug Gene Interaction Database)NT5DC4
DoCM (Curated mutations)NT5DC4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NT5DC4 (select a term)
intoGenNT5DC4
Cancer3DNT5DC4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNT5DC4
Genetic Testing Registry NT5DC4
NextProtQ86YG4 [Medical]
TSGene284958
GENETestsNT5DC4
Huge Navigator NT5DC4 [HugePedia]
snp3D : Map Gene to Disease284958
BioCentury BCIQNT5DC4
ClinGenNT5DC4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284958
Chemical/Pharm GKB GenePA143485563
Clinical trialNT5DC4
Miscellaneous
canSAR (ICR)NT5DC4 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNT5DC4
EVEXNT5DC4
GoPubMedNT5DC4
iHOPNT5DC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:45:31 CEST 2017

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