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NTM-AS1 (NTM antisense RNA 1)

Identity

Alias_namesC11orf39
chromosome 11 open reading frame 39
Alias_symbol (synonym)FLJ45436
Other alias
HGNC (Hugo) NTM-AS1
LocusID (NCBI) 101929637
Atlas_Id 78176
Location 11q25  [Link to chromosome band 11q25]
Location_base_pair Starts at 131528207 and ends at 131532850 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)NTM-AS1   32293
Cards
Entrez_Gene (NCBI)NTM-AS1  101929637  NTM antisense RNA 1
AliasesC11orf39
GeneCards (Weizmann)NTM-AS1
Ensembl hg19 (Hinxton)ENSG00000224795 [Gene_View]  chr11:131528207-131532850 [Contig_View]  NTM-AS1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000224795 [Gene_View]  chr11:131528207-131532850 [Contig_View]  NTM-AS1 [Vega]
ICGC DataPortalENSG00000224795
TCGA cBioPortalNTM-AS1
AceView (NCBI)NTM-AS1
Genatlas (Paris)NTM-AS1
WikiGenes101929637
SOURCE (Princeton)NTM-AS1
Genetics Home Reference (NIH)NTM-AS1
Genomic and cartography
GoldenPath hg19 (UCSC)NTM-AS1  -     chr11:131528207-131532850 -  11q25   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NTM-AS1  -     11q25   [Description]    (hg38-Dec_2013)
EnsemblNTM-AS1 - 11q25 [CytoView hg19]  NTM-AS1 - 11q25 [CytoView hg38]
Mapping of homologs : NCBINTM-AS1 [Mapview hg19]  NTM-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127362 HG504339
RefSeq transcript (Entrez)NM_207432
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929381
Consensus coding sequences : CCDS (NCBI)NTM-AS1
Cluster EST : UnigeneHs.730330 [ NCBI ]
CGAP (NCI)Hs.730330
Alternative Splicing GalleryENSG00000224795
Gene ExpressionNTM-AS1 [ NCBI-GEO ]   NTM-AS1 [ EBI - ARRAY_EXPRESS ]   NTM-AS1 [ SEEK ]   NTM-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)NTM-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101929637
GTEX Portal (Tissue expression)NTM-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZSK4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZSK4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZSK4
Splice isoforms : SwissVarQ6ZSK4
PhosPhoSitePlusQ6ZSK4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NTM-AS1
DMDM Disease mutations101929637
Blocks (Seattle)NTM-AS1
SuperfamilyQ6ZSK4
Human Protein AtlasENSG00000224795
Peptide AtlasQ6ZSK4
Protein Interaction databases
DIP (DOE-UCLA)Q6ZSK4
IntAct (EBI)Q6ZSK4
FunCoupENSG00000224795
BioGRIDNTM-AS1
STRING (EMBL)NTM-AS1
ZODIACNTM-AS1
Ontologies - Pathways
QuickGOQ6ZSK4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkNTM-AS1
Atlas of Cancer Signalling NetworkNTM-AS1
Wikipedia pathwaysNTM-AS1
Orthology - Evolution
OrthoDB101929637
GeneTree (enSembl)ENSG00000224795
Phylogenetic Trees/Animal Genes : TreeFamNTM-AS1
HOVERGENQ6ZSK4
HOGENOMQ6ZSK4
Homologs : HomoloGeneNTM-AS1
Homology/Alignments : Family Browser (UCSC)NTM-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNTM-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NTM-AS1
dbVarNTM-AS1
ClinVarNTM-AS1
1000_GenomesNTM-AS1 
Exome Variant ServerNTM-AS1
ExAC (Exome Aggregation Consortium)NTM-AS1 (select the gene name)
Genetic variants : HAPMAP101929637
Genomic Variants (DGV)NTM-AS1 [DGVbeta]
DECIPHER (Syndromes)11:131528207-131532850  ENSG00000224795
CONAN: Copy Number AnalysisNTM-AS1 
Mutations
ICGC Data PortalNTM-AS1 
TCGA Data PortalNTM-AS1 
Broad Tumor PortalNTM-AS1
OASIS PortalNTM-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNTM-AS1
BioMutasearch NTM-AS1
DgiDB (Drug Gene Interaction Database)NTM-AS1
DoCM (Curated mutations)NTM-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NTM-AS1 (select a term)
intoGenNTM-AS1
Cancer3DNTM-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNTM-AS1
Genetic Testing Registry NTM-AS1
NextProtQ6ZSK4 [Medical]
TSGene101929637
GENETestsNTM-AS1
Huge Navigator NTM-AS1 [HugePedia]
snp3D : Map Gene to Disease101929637
BioCentury BCIQNTM-AS1
ClinGenNTM-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101929637
Clinical trialNTM-AS1
Miscellaneous
canSAR (ICR)NTM-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNTM-AS1
EVEXNTM-AS1
GoPubMedNTM-AS1
iHOPNTM-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:35:29 CET 2017

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