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NTM (neurotrimin)

Identity

Alias_symbol (synonym)HNT
NTRI
IGLON2
Other alias
HGNC (Hugo) NTM
LocusID (NCBI) 50863
Atlas_Id 53234
Location 11q25  [Link to chromosome band 11q25]
Location_base_pair Starts at 131370476 and ends at 132336822 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NTM (11q25) / CCDC86 (11q12.2)NTM (11q25) / OTUD7B (1q21.2)SPCS1 (3p21.1) / NTM (11q25)
NTM 11q25 / CCDC86 11q12.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NTM   17941
Cards
Entrez_Gene (NCBI)NTM  50863  neurotrimin
AliasesHNT; IGLON2; NTRI
GeneCards (Weizmann)NTM
Ensembl hg19 (Hinxton)ENSG00000182667 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182667 [Gene_View]  chr11:131370476-132336822 [Contig_View]  NTM [Vega]
ICGC DataPortalENSG00000182667
TCGA cBioPortalNTM
AceView (NCBI)NTM
Genatlas (Paris)NTM
WikiGenes50863
SOURCE (Princeton)NTM
Genetics Home Reference (NIH)NTM
Genomic and cartography
GoldenPath hg38 (UCSC)NTM  -     chr11:131370476-132336822 +  11q25   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NTM  -     11q25   [Description]    (hg19-Feb_2009)
EnsemblNTM - 11q25 [CytoView hg19]  NTM - 11q25 [CytoView hg38]
Mapping of homologs : NCBINTM [Mapview hg19]  NTM [Mapview hg38]
OMIM607938   
Gene and transcription
Genbank (Entrez)AA854425 AF126426 AI360870 AI573168 AK293448
RefSeq transcript (Entrez)NM_001048209 NM_001144058 NM_001144059 NM_016522
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NTM
Cluster EST : UnigeneHs.504352 [ NCBI ]
CGAP (NCI)Hs.504352
Alternative Splicing GalleryENSG00000182667
Gene ExpressionNTM [ NCBI-GEO ]   NTM [ EBI - ARRAY_EXPRESS ]   NTM [ SEEK ]   NTM [ MEM ]
Gene Expression Viewer (FireBrowse)NTM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)50863
GTEX Portal (Tissue expression)NTM
Human Protein AtlasENSG00000182667-NTM [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P121   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P121  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P121
Splice isoforms : SwissVarQ9P121
PhosPhoSitePlusQ9P121
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2    Immunoglobulin   
Domain families : Pfam (Sanger)I-set (PF07679)    ig (PF00047)   
Domain families : Pfam (NCBI)pfam07679    pfam00047   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)NTM
DMDM Disease mutations50863
Blocks (Seattle)NTM
SuperfamilyQ9P121
Human Protein Atlas [tissue]ENSG00000182667-NTM [tissue]
Peptide AtlasQ9P121
HPRD06398
IPIIPI00853129   IPI01011005   IPI00442298   IPI01015280   IPI00442294   IPI00969498   IPI01020799   IPI00852599   IPI00852877   
Protein Interaction databases
DIP (DOE-UCLA)Q9P121
IntAct (EBI)Q9P121
FunCoupENSG00000182667
BioGRIDNTM
STRING (EMBL)NTM
ZODIACNTM
Ontologies - Pathways
QuickGOQ9P121
Ontology : AmiGOprotein binding  extracellular region  plasma membrane  C-terminal protein lipidation  cell adhesion  neuron recognition  anchored component of membrane  
Ontology : EGO-EBIprotein binding  extracellular region  plasma membrane  C-terminal protein lipidation  cell adhesion  neuron recognition  anchored component of membrane  
NDEx NetworkNTM
Atlas of Cancer Signalling NetworkNTM
Wikipedia pathwaysNTM
Orthology - Evolution
OrthoDB50863
GeneTree (enSembl)ENSG00000182667
Phylogenetic Trees/Animal Genes : TreeFamNTM
HOVERGENQ9P121
HOGENOMQ9P121
Homologs : HomoloGeneNTM
Homology/Alignments : Family Browser (UCSC)NTM
Gene fusions - Rearrangements
Fusion : MitelmanNTM/CCDC86 [11q25/11q12.2]  
Fusion: TCGA_MDACCNTM 11q25 CCDC86 11q12.2 LGG
Tumor Fusion PortalNTM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNTM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NTM
dbVarNTM
ClinVarNTM
1000_GenomesNTM 
Exome Variant ServerNTM
ExAC (Exome Aggregation Consortium)ENSG00000182667
GNOMAD BrowserENSG00000182667
Genetic variants : HAPMAP50863
Genomic Variants (DGV)NTM [DGVbeta]
DECIPHERNTM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNTM 
Mutations
ICGC Data PortalNTM 
TCGA Data PortalNTM 
Broad Tumor PortalNTM
OASIS PortalNTM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNTM  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNTM
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NTM
DgiDB (Drug Gene Interaction Database)NTM
DoCM (Curated mutations)NTM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NTM (select a term)
intoGenNTM
Cancer3DNTM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607938   
Orphanet
DisGeNETNTM
MedgenNTM
Genetic Testing Registry NTM
NextProtQ9P121 [Medical]
TSGene50863
GENETestsNTM
Target ValidationNTM
Huge Navigator NTM [HugePedia]
snp3D : Map Gene to Disease50863
BioCentury BCIQNTM
ClinGenNTM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD50863
Chemical/Pharm GKB GenePA164724212
Clinical trialNTM
Miscellaneous
canSAR (ICR)NTM (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNTM
EVEXNTM
GoPubMedNTM
iHOPNTM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:26:54 CET 2017

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