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NTMT1 (N-terminal Xaa-Pro-Lys N-methyltransferase 1)

Identity

Alias_namesC9orf32
METTL11A
chromosome 9 open reading frame 32
methyltransferase like 11A
Alias_symbol (synonym)AD-003
HOMT1A
Other aliasNRMT
NTM1A
HGNC (Hugo) NTMT1
LocusID (NCBI) 28989
Atlas_Id 55667
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 132371163 and ends at 132398410 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NTMT1   23373
Cards
Entrez_Gene (NCBI)NTMT1  28989  N-terminal Xaa-Pro-Lys N-methyltransferase 1
AliasesAD-003; C9orf32; HOMT1A; METTL11A; 
NRMT; NTM1A
GeneCards (Weizmann)NTMT1
Ensembl hg19 (Hinxton)ENSG00000148335 [Gene_View]  chr9:132371163-132398410 [Contig_View]  NTMT1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000148335 [Gene_View]  chr9:132371163-132398410 [Contig_View]  NTMT1 [Vega]
ICGC DataPortalENSG00000148335
TCGA cBioPortalNTMT1
AceView (NCBI)NTMT1
Genatlas (Paris)NTMT1
WikiGenes28989
SOURCE (Princeton)NTMT1
Genetics Home Reference (NIH)NTMT1
Genomic and cartography
GoldenPath hg19 (UCSC)NTMT1  -     chr9:132371163-132398410 +  9q34.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NTMT1  -     9q34.11   [Description]    (hg38-Dec_2013)
EnsemblNTMT1 - 9q34.11 [CytoView hg19]  NTMT1 - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBINTMT1 [Mapview hg19]  NTMT1 [Mapview hg38]
OMIM613560   
Gene and transcription
Genbank (Entrez)AF110776 AI802417 AK290957 AK292332 AK298840
RefSeq transcript (Entrez)NM_001286796 NM_001286797 NM_001286798 NM_001286799 NM_001286800 NM_001286801 NM_001286802 NM_001286803 NM_014064
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)NTMT1
Cluster EST : UnigeneHs.744027 [ NCBI ]
CGAP (NCI)Hs.744027
Alternative Splicing GalleryENSG00000148335
Gene ExpressionNTMT1 [ NCBI-GEO ]   NTMT1 [ EBI - ARRAY_EXPRESS ]   NTMT1 [ SEEK ]   NTMT1 [ MEM ]
Gene Expression Viewer (FireBrowse)NTMT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28989
GTEX Portal (Tissue expression)NTMT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BV86   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BV86  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BV86
Splice isoforms : SwissVarQ9BV86
Catalytic activity : Enzyme2.1.1.244 [ Enzyme-Expasy ]   2.1.1.2442.1.1.244 [ IntEnz-EBI ]   2.1.1.244 [ BRENDA ]   2.1.1.244 [ KEGG ]   
PhosPhoSitePlusQ9BV86
Domains : Interpro (EBI)MeTrfase_NTM1    SAM-dependent_MTases   
Domain families : Pfam (Sanger)Methyltransf_PK (PF05891)   
Domain families : Pfam (NCBI)pfam05891   
Conserved Domain (NCBI)NTMT1
DMDM Disease mutations28989
Blocks (Seattle)NTMT1
PDB (SRS)2EX4    5CVD    5CVE    5E1B    5E1D    5E1M    5E1O    5E2A    5E2B   
PDB (PDBSum)2EX4    5CVD    5CVE    5E1B    5E1D    5E1M    5E1O    5E2A    5E2B   
PDB (IMB)2EX4    5CVD    5CVE    5E1B    5E1D    5E1M    5E1O    5E2A    5E2B   
PDB (RSDB)2EX4    5CVD    5CVE    5E1B    5E1D    5E1M    5E1O    5E2A    5E2B   
Structural Biology KnowledgeBase2EX4    5CVD    5CVE    5E1B    5E1D    5E1M    5E1O    5E2A    5E2B   
SCOP (Structural Classification of Proteins)2EX4    5CVD    5CVE    5E1B    5E1D    5E1M    5E1O    5E2A    5E2B   
CATH (Classification of proteins structures)2EX4    5CVD    5CVE    5E1B    5E1D    5E1M    5E1O    5E2A    5E2B   
SuperfamilyQ9BV86
Human Protein AtlasENSG00000148335
Peptide AtlasQ9BV86
HPRD10628
IPIIPI00515040   IPI00549389   
Protein Interaction databases
DIP (DOE-UCLA)Q9BV86
IntAct (EBI)Q9BV86
FunCoupENSG00000148335
BioGRIDNTMT1
STRING (EMBL)NTMT1
ZODIACNTMT1
Ontologies - Pathways
QuickGOQ9BV86
Ontology : AmiGOnucleus  nucleoplasm  cytoplasm  cytoplasm  spindle organization  chromosome segregation  protein methyltransferase activity  N-terminal peptidyl-alanine methylation  N-terminal peptidyl-alanine trimethylation  N-terminal peptidyl-proline dimethylation  N-terminal peptidyl-serine dimethylation  N-terminal peptidyl-serine trimethylation  N-terminal protein N-methyltransferase activity  
Ontology : EGO-EBInucleus  nucleoplasm  cytoplasm  cytoplasm  spindle organization  chromosome segregation  protein methyltransferase activity  N-terminal peptidyl-alanine methylation  N-terminal peptidyl-alanine trimethylation  N-terminal peptidyl-proline dimethylation  N-terminal peptidyl-serine dimethylation  N-terminal peptidyl-serine trimethylation  N-terminal protein N-methyltransferase activity  
NDEx NetworkNTMT1
Atlas of Cancer Signalling NetworkNTMT1
Wikipedia pathwaysNTMT1
Orthology - Evolution
OrthoDB28989
GeneTree (enSembl)ENSG00000148335
Phylogenetic Trees/Animal Genes : TreeFamNTMT1
HOVERGENQ9BV86
HOGENOMQ9BV86
Homologs : HomoloGeneNTMT1
Homology/Alignments : Family Browser (UCSC)NTMT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNTMT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NTMT1
dbVarNTMT1
ClinVarNTMT1
1000_GenomesNTMT1 
Exome Variant ServerNTMT1
ExAC (Exome Aggregation Consortium)NTMT1 (select the gene name)
Genetic variants : HAPMAP28989
Genomic Variants (DGV)NTMT1 [DGVbeta]
DECIPHER (Syndromes)9:132371163-132398410  ENSG00000148335
CONAN: Copy Number AnalysisNTMT1 
Mutations
ICGC Data PortalNTMT1 
TCGA Data PortalNTMT1 
Broad Tumor PortalNTMT1
OASIS PortalNTMT1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNTMT1
BioMutasearch NTMT1
DgiDB (Drug Gene Interaction Database)NTMT1
DoCM (Curated mutations)NTMT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NTMT1 (select a term)
intoGenNTMT1
Cancer3DNTMT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613560   
Orphanet
MedgenNTMT1
Genetic Testing Registry NTMT1
NextProtQ9BV86 [Medical]
TSGene28989
GENETestsNTMT1
Huge Navigator NTMT1 [HugePedia]
snp3D : Map Gene to Disease28989
BioCentury BCIQNTMT1
ClinGenNTMT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28989
Chemical/Pharm GKB GenePA162395788
Clinical trialNTMT1
Miscellaneous
canSAR (ICR)NTMT1 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNTMT1
EVEXNTMT1
GoPubMedNTMT1
iHOPNTMT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:19:30 CET 2017

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