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NTN3 (netrin 3)

Identity

Alias_namesNTN2L
netrin 2 (chicken)-like
netrin 2-like (chicken)
Other alias
HGNC (Hugo) NTN3
LocusID (NCBI) 4917
Atlas_Id 71006
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 2471499 and ends at 2474145 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NTN3   8030
Cards
Entrez_Gene (NCBI)NTN3  4917  netrin 3
AliasesNTN2L
GeneCards (Weizmann)NTN3
Ensembl hg19 (Hinxton)ENSG00000162068 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162068 [Gene_View]  chr16:2471499-2474145 [Contig_View]  NTN3 [Vega]
ICGC DataPortalENSG00000162068
TCGA cBioPortalNTN3
AceView (NCBI)NTN3
Genatlas (Paris)NTN3
WikiGenes4917
SOURCE (Princeton)NTN3
Genetics Home Reference (NIH)NTN3
Genomic and cartography
GoldenPath hg38 (UCSC)NTN3  -     chr16:2471499-2474145 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NTN3  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblNTN3 - 16p13.3 [CytoView hg19]  NTN3 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBINTN3 [Mapview hg19]  NTN3 [Mapview hg38]
OMIM602349   
Gene and transcription
Genbank (Entrez)U86759
RefSeq transcript (Entrez)NM_006181
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NTN3
Cluster EST : UnigeneHs.158336 [ NCBI ]
CGAP (NCI)Hs.158336
Alternative Splicing GalleryENSG00000162068
Gene ExpressionNTN3 [ NCBI-GEO ]   NTN3 [ EBI - ARRAY_EXPRESS ]   NTN3 [ SEEK ]   NTN3 [ MEM ]
Gene Expression Viewer (FireBrowse)NTN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4917
GTEX Portal (Tissue expression)NTN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00634   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00634  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00634
Splice isoforms : SwissVarO00634
PhosPhoSitePlusO00634
Domaine pattern : Prosite (Expaxy)EGF_1 (PS00022)    EGF_LAM_1 (PS01248)    EGF_LAM_2 (PS50027)    LAMININ_NTER (PS51117)    NTR (PS50189)   
Domains : Interpro (EBI)Laminin_EGF    Laminin_N    Netrin_domain    Netrin_module_non-TIMP    TIMP-like_OB-fold   
Domain families : Pfam (Sanger)Laminin_EGF (PF00053)    Laminin_N (PF00055)    NTR (PF01759)   
Domain families : Pfam (NCBI)pfam00053    pfam00055    pfam01759   
Domain families : Smart (EMBL)C345C (SM00643)  EGF_Lam (SM00180)  LamNT (SM00136)  
Conserved Domain (NCBI)NTN3
DMDM Disease mutations4917
Blocks (Seattle)NTN3
SuperfamilyO00634
Human Protein AtlasENSG00000162068
Peptide AtlasO00634
HPRD03827
IPIIPI00006193   
Protein Interaction databases
DIP (DOE-UCLA)O00634
IntAct (EBI)O00634
FunCoupENSG00000162068
BioGRIDNTN3
STRING (EMBL)NTN3
ZODIACNTN3
Ontologies - Pathways
QuickGOO00634
Ontology : AmiGOmolecular_function  receptor binding  protein binding  cellular_component  proteinaceous extracellular matrix  Golgi apparatus  axon guidance  
Ontology : EGO-EBImolecular_function  receptor binding  protein binding  cellular_component  proteinaceous extracellular matrix  Golgi apparatus  axon guidance  
Pathways : KEGGAxon guidance   
NDEx NetworkNTN3
Atlas of Cancer Signalling NetworkNTN3
Wikipedia pathwaysNTN3
Orthology - Evolution
OrthoDB4917
GeneTree (enSembl)ENSG00000162068
Phylogenetic Trees/Animal Genes : TreeFamNTN3
HOVERGENO00634
HOGENOMO00634
Homologs : HomoloGeneNTN3
Homology/Alignments : Family Browser (UCSC)NTN3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNTN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NTN3
dbVarNTN3
ClinVarNTN3
1000_GenomesNTN3 
Exome Variant ServerNTN3
ExAC (Exome Aggregation Consortium)NTN3 (select the gene name)
Genetic variants : HAPMAP4917
Genomic Variants (DGV)NTN3 [DGVbeta]
DECIPHERNTN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNTN3 
Mutations
ICGC Data PortalNTN3 
TCGA Data PortalNTN3 
Broad Tumor PortalNTN3
OASIS PortalNTN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNTN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNTN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NTN3
DgiDB (Drug Gene Interaction Database)NTN3
DoCM (Curated mutations)NTN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NTN3 (select a term)
intoGenNTN3
Cancer3DNTN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602349   
Orphanet
MedgenNTN3
Genetic Testing Registry NTN3
NextProtO00634 [Medical]
TSGene4917
GENETestsNTN3
Target ValidationNTN3
Huge Navigator NTN3 [HugePedia]
snp3D : Map Gene to Disease4917
BioCentury BCIQNTN3
ClinGenNTN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4917
Chemical/Pharm GKB GenePA164724231
Clinical trialNTN3
Miscellaneous
canSAR (ICR)NTN3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNTN3
EVEXNTN3
GoPubMedNTN3
iHOPNTN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:24 CEST 2017

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