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NTN5 (netrin 5)

Identity

Other alias-
HGNC (Hugo) NTN5
LocusID (NCBI) 126147
Atlas_Id 71007
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 48661407 and ends at 48673081 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NTN5   25208
Cards
Entrez_Gene (NCBI)NTN5  126147  netrin 5
Aliases
GeneCards (Weizmann)NTN5
Ensembl hg19 (Hinxton)ENSG00000142233 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142233 [Gene_View]  chr19:48661407-48673081 [Contig_View]  NTN5 [Vega]
ICGC DataPortalENSG00000142233
TCGA cBioPortalNTN5
AceView (NCBI)NTN5
Genatlas (Paris)NTN5
WikiGenes126147
SOURCE (Princeton)NTN5
Genetics Home Reference (NIH)NTN5
Genomic and cartography
GoldenPath hg38 (UCSC)NTN5  -     chr19:48661407-48673081 -  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NTN5  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblNTN5 - 19q13.33 [CytoView hg19]  NTN5 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBINTN5 [Mapview hg19]  NTN5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC018654 BC018697 BC021210 BC033207 BE270224
RefSeq transcript (Entrez)NM_145807
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NTN5
Cluster EST : UnigeneHs.326217 [ NCBI ]
CGAP (NCI)Hs.326217
Alternative Splicing GalleryENSG00000142233
Gene ExpressionNTN5 [ NCBI-GEO ]   NTN5 [ EBI - ARRAY_EXPRESS ]   NTN5 [ SEEK ]   NTN5 [ MEM ]
Gene Expression Viewer (FireBrowse)NTN5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126147
GTEX Portal (Tissue expression)NTN5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WTR8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WTR8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WTR8
Splice isoforms : SwissVarQ8WTR8
PhosPhoSitePlusQ8WTR8
Domaine pattern : Prosite (Expaxy)EGF_1 (PS00022)    EGF_LAM_1 (PS01248)    EGF_LAM_2 (PS50027)    NTR (PS50189)   
Domains : Interpro (EBI)Laminin_EGF    Netrin_domain    Netrin_module_non-TIMP    TIMP-like_OB-fold   
Domain families : Pfam (Sanger)Laminin_EGF (PF00053)    NTR (PF01759)   
Domain families : Pfam (NCBI)pfam00053    pfam01759   
Domain families : Smart (EMBL)C345C (SM00643)  EGF_Lam (SM00180)  
Conserved Domain (NCBI)NTN5
DMDM Disease mutations126147
Blocks (Seattle)NTN5
SuperfamilyQ8WTR8
Human Protein AtlasENSG00000142233
Peptide AtlasQ8WTR8
HPRD14031
IPIIPI00102812   IPI00645833   
Protein Interaction databases
DIP (DOE-UCLA)Q8WTR8
IntAct (EBI)Q8WTR8
FunCoupENSG00000142233
BioGRIDNTN5
STRING (EMBL)NTN5
ZODIACNTN5
Ontologies - Pathways
QuickGOQ8WTR8
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkNTN5
Atlas of Cancer Signalling NetworkNTN5
Wikipedia pathwaysNTN5
Orthology - Evolution
OrthoDB126147
GeneTree (enSembl)ENSG00000142233
Phylogenetic Trees/Animal Genes : TreeFamNTN5
HOVERGENQ8WTR8
HOGENOMQ8WTR8
Homologs : HomoloGeneNTN5
Homology/Alignments : Family Browser (UCSC)NTN5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNTN5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NTN5
dbVarNTN5
ClinVarNTN5
1000_GenomesNTN5 
Exome Variant ServerNTN5
ExAC (Exome Aggregation Consortium)NTN5 (select the gene name)
Genetic variants : HAPMAP126147
Genomic Variants (DGV)NTN5 [DGVbeta]
DECIPHERNTN5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNTN5 
Mutations
ICGC Data PortalNTN5 
TCGA Data PortalNTN5 
Broad Tumor PortalNTN5
OASIS PortalNTN5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNTN5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNTN5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NTN5
DgiDB (Drug Gene Interaction Database)NTN5
DoCM (Curated mutations)NTN5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NTN5 (select a term)
intoGenNTN5
Cancer3DNTN5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNTN5
Genetic Testing Registry NTN5
NextProtQ8WTR8 [Medical]
TSGene126147
GENETestsNTN5
Target ValidationNTN5
Huge Navigator NTN5 [HugePedia]
snp3D : Map Gene to Disease126147
BioCentury BCIQNTN5
ClinGenNTN5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126147
Chemical/Pharm GKB GenePA164724232
Clinical trialNTN5
Miscellaneous
canSAR (ICR)NTN5 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNTN5
EVEXNTN5
GoPubMedNTN5
iHOPNTN5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:33:12 CEST 2017

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