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NTNG1 (netrin G1)

Identity

Alias (NCBI)Lmnt1
HGNC (Hugo) NTNG1
HGNC Alias symbKIAA0976
Lmnt1
HGNC Alias namenetrin G1f
 Netrin-G1
LocusID (NCBI) 22854
Atlas_Id 54513
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 107140088 and ends at 107484923 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
B2M (15q21.1) / NTNG1 (1p13.3)FAM69A (1p22.1) / NTNG1 (1p13.3)HSPG2 (1p36.12) / NTNG1 (1p13.3)
MKL1 (22q13.1) / NTNG1 (1p13.3)NTNG1 (1p13.3) / BCAS1 (20q13.2)NTNG1 (1p13.3) / CALN1 (7q11.22)
FAM69A 1p22.1 / NTNG1 1p13.3HSPG2 1p36.12 / NTNG1 1p13.3MKL1 22q13.1 / NTNG1 1p13.3
NTNG1 1p13.3 / CALN1 7q11.22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)NTNG1   23319
Cards
Entrez_Gene (NCBI)NTNG1    netrin G1
AliasesLmnt1
GeneCards (Weizmann)NTNG1
Ensembl hg19 (Hinxton)ENSG00000162631 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162631 [Gene_View]  ENSG00000162631 [Sequence]  chr1:107140088-107484923 [Contig_View]  NTNG1 [Vega]
ICGC DataPortalENSG00000162631
TCGA cBioPortalNTNG1
AceView (NCBI)NTNG1
Genatlas (Paris)NTNG1
SOURCE (Princeton)NTNG1
Genetics Home Reference (NIH)NTNG1
Genomic and cartography
GoldenPath hg38 (UCSC)NTNG1  -     chr1:107140088-107484923 +  1p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NTNG1  -     1p13.3   [Description]    (hg19-Feb_2009)
GoldenPathNTNG1 - 1p13.3 [CytoView hg19]  NTNG1 - 1p13.3 [CytoView hg38]
ImmunoBaseENSG00000162631
Genome Data Viewer NCBINTNG1 [Mapview hg19]  
OMIM608818   
Gene and transcription
Genbank (Entrez)AB023193 AK025924 AK296533 AK297659 AY358365
RefSeq transcript (Entrez)NM_001113226 NM_001113228 NM_001312688 NM_001330665 NM_001372166 NM_001372167 NM_001372168 NM_001372169 NM_001372170 NM_001372171 NM_014917
Consensus coding sequences : CCDS (NCBI)NTNG1
Gene ExpressionNTNG1 [ NCBI-GEO ]   NTNG1 [ EBI - ARRAY_EXPRESS ]   NTNG1 [ SEEK ]   NTNG1 [ MEM ]
Gene Expression Viewer (FireBrowse)NTNG1 [ Firebrowse - Broad ]
GenevisibleExpression of NTNG1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22854
GTEX Portal (Tissue expression)NTNG1
Human Protein AtlasENSG00000162631-NTNG1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2I2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2I2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2I2
PhosPhoSitePlusQ9Y2I2
Domaine pattern : Prosite (Expaxy)EGF_1 (PS00022)    EGF_3 (PS50026)    EGF_LAM_1 (PS01248)    EGF_LAM_2 (PS50027)    LAMININ_NTER (PS51117)   
Domains : Interpro (EBI)EGF-like_dom    Laminin_EGF    Laminin_N    Laminin_N_sf   
Domain families : Pfam (Sanger)Laminin_EGF (PF00053)    Laminin_N (PF00055)   
Domain families : Pfam (NCBI)pfam00053    pfam00055   
Domain families : Smart (EMBL)EGF (SM00181)  EGF_Lam (SM00180)  LamNT (SM00136)  
Conserved Domain (NCBI)NTNG1
PDB (RSDB)3ZYJ   
PDB Europe3ZYJ   
PDB (PDBSum)3ZYJ   
PDB (IMB)3ZYJ   
Structural Biology KnowledgeBase3ZYJ   
SCOP (Structural Classification of Proteins)3ZYJ   
CATH (Classification of proteins structures)3ZYJ   
SuperfamilyQ9Y2I2
AlphaFold pdb e-kbQ9Y2I2   
Human Protein Atlas [tissue]ENSG00000162631-NTNG1 [tissue]
HPRD16389
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2I2
IntAct (EBI)Q9Y2I2
BioGRIDNTNG1
STRING (EMBL)NTNG1
ZODIACNTNG1
Ontologies - Pathways
QuickGOQ9Y2I2
Ontology : AmiGOprotein binding  extracellular region  plasma membrane  plasma membrane  axonogenesis  animal organ morphogenesis  tissue development  regulation of neuron projection development  cell migration  substrate adhesion-dependent cell spreading  laminin complex  anchored component of plasma membrane  modulation of chemical synaptic transmission  cell adhesion molecule binding  basement membrane assembly  cell-cell adhesion mediator activity  cell-cell adhesion mediator activity  Schaffer collateral - CA1 synapse  glutamatergic synapse  anchored component of presynaptic active zone membrane  synaptic membrane adhesion  regulation of neuron projection arborization  regulation of neuron migration  
Ontology : EGO-EBIprotein binding  extracellular region  plasma membrane  plasma membrane  axonogenesis  animal organ morphogenesis  tissue development  regulation of neuron projection development  cell migration  substrate adhesion-dependent cell spreading  laminin complex  anchored component of plasma membrane  modulation of chemical synaptic transmission  cell adhesion molecule binding  basement membrane assembly  cell-cell adhesion mediator activity  cell-cell adhesion mediator activity  Schaffer collateral - CA1 synapse  glutamatergic synapse  anchored component of presynaptic active zone membrane  synaptic membrane adhesion  regulation of neuron projection arborization  regulation of neuron migration  
Pathways : KEGGAxon guidance    Cell adhesion molecules (CAMs)   
NDEx NetworkNTNG1
Atlas of Cancer Signalling NetworkNTNG1
Wikipedia pathwaysNTNG1
Orthology - Evolution
OrthoDB22854
GeneTree (enSembl)ENSG00000162631
Phylogenetic Trees/Animal Genes : TreeFamNTNG1
Homologs : HomoloGeneNTNG1
Homology/Alignments : Family Browser (UCSC)NTNG1
Gene fusions - Rearrangements
Fusion : MitelmanFAM69A/NTNG1 [1p22.1/1p13.3]  
Fusion : MitelmanHSPG2/NTNG1 [1p36.12/1p13.3]  
Fusion : MitelmanMKL1/NTNG1 [22q13.1/1p13.3]  
Fusion : MitelmanNTNG1/BCAS1 [1p13.3/20q13.2]  
Fusion : MitelmanNTNG1/CALN1 [1p13.3/7q11.22]  
Fusion : QuiverNTNG1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNTNG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NTNG1
dbVarNTNG1
ClinVarNTNG1
MonarchNTNG1
1000_GenomesNTNG1 
Exome Variant ServerNTNG1
GNOMAD BrowserENSG00000162631
Varsome BrowserNTNG1
ACMGNTNG1 variants
VarityQ9Y2I2
Genomic Variants (DGV)NTNG1 [DGVbeta]
DECIPHERNTNG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNTNG1 
Mutations
ICGC Data PortalNTNG1 
TCGA Data PortalNTNG1 
Broad Tumor PortalNTNG1
OASIS PortalNTNG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNTNG1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNTNG1
Mutations and Diseases : HGMDNTNG1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaNTNG1
DgiDB (Drug Gene Interaction Database)NTNG1
DoCM (Curated mutations)NTNG1
CIViC (Clinical Interpretations of Variants in Cancer)NTNG1
Cancer3DNTNG1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608818   
Orphanet3164   
DisGeNETNTNG1
MedgenNTNG1
Genetic Testing Registry NTNG1
NextProtQ9Y2I2 [Medical]
GENETestsNTNG1
Target ValidationNTNG1
Huge Navigator NTNG1 [HugePedia]
ClinGenNTNG1
Clinical trials, drugs, therapy
MyCancerGenomeNTNG1
Protein Interactions : CTDNTNG1
Pharm GKB GenePA164742200
PharosQ9Y2I2
Clinical trialNTNG1
Miscellaneous
canSAR (ICR)NTNG1
HarmonizomeNTNG1
DataMed IndexNTNG1
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNTNG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:23:26 CEST 2021

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