Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NTNG1 (netrin G1)

Identity

Alias_symbol (synonym)KIAA0976
Lmnt1
Other alias
HGNC (Hugo) NTNG1
LocusID (NCBI) 22854
Atlas_Id 54513
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 107148069 and ends at 107484899 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
B2M (15q21.1) / NTNG1 (1p13.3)FAM69A (1p22.1) / NTNG1 (1p13.3)HSPG2 (1p36.12) / NTNG1 (1p13.3)
MKL1 (22q13.1) / NTNG1 (1p13.3)NTNG1 (1p13.3) / BCAS1 (20q13.2)NTNG1 (1p13.3) / CALN1 (7q11.22)
FAM69A 1p22.1 / NTNG1 1p13.3HSPG2 1p36.12 / NTNG1 1p13.3MKL1 22q13.1 / NTNG1 1p13.3
NTNG1 1p13.3 / CALN1 7q11.22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NTNG1   23319
Cards
Entrez_Gene (NCBI)NTNG1  22854  netrin G1
AliasesLmnt1
GeneCards (Weizmann)NTNG1
Ensembl hg19 (Hinxton)ENSG00000162631 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162631 [Gene_View]  chr1:107148069-107484899 [Contig_View]  NTNG1 [Vega]
ICGC DataPortalENSG00000162631
TCGA cBioPortalNTNG1
AceView (NCBI)NTNG1
Genatlas (Paris)NTNG1
WikiGenes22854
SOURCE (Princeton)NTNG1
Genetics Home Reference (NIH)NTNG1
Genomic and cartography
GoldenPath hg38 (UCSC)NTNG1  -     chr1:107148069-107484899 +  1p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NTNG1  -     1p13.3   [Description]    (hg19-Feb_2009)
EnsemblNTNG1 - 1p13.3 [CytoView hg19]  NTNG1 - 1p13.3 [CytoView hg38]
Mapping of homologs : NCBINTNG1 [Mapview hg19]  NTNG1 [Mapview hg38]
OMIM608818   
Gene and transcription
Genbank (Entrez)AB023193 AK025924 AK296533 AK297659 AY358365
RefSeq transcript (Entrez)NM_001113226 NM_001113228 NM_001312688 NM_001330665 NM_014917
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NTNG1
Cluster EST : UnigeneHs.732535 [ NCBI ]
CGAP (NCI)Hs.732535
Alternative Splicing GalleryENSG00000162631
Gene ExpressionNTNG1 [ NCBI-GEO ]   NTNG1 [ EBI - ARRAY_EXPRESS ]   NTNG1 [ SEEK ]   NTNG1 [ MEM ]
Gene Expression Viewer (FireBrowse)NTNG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22854
GTEX Portal (Tissue expression)NTNG1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2I2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2I2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2I2
Splice isoforms : SwissVarQ9Y2I2
PhosPhoSitePlusQ9Y2I2
Domaine pattern : Prosite (Expaxy)EGF_1 (PS00022)    EGF_3 (PS50026)    EGF_LAM_1 (PS01248)    EGF_LAM_2 (PS50027)    LAMININ_NTER (PS51117)   
Domains : Interpro (EBI)EGF-like_CS    EGF-like_dom    Galactose-bd-like    Laminin_EGF    Laminin_N   
Domain families : Pfam (Sanger)Laminin_EGF (PF00053)    Laminin_N (PF00055)   
Domain families : Pfam (NCBI)pfam00053    pfam00055   
Domain families : Smart (EMBL)EGF (SM00181)  EGF_Lam (SM00180)  LamNT (SM00136)  
Conserved Domain (NCBI)NTNG1
DMDM Disease mutations22854
Blocks (Seattle)NTNG1
PDB (SRS)3ZYJ   
PDB (PDBSum)3ZYJ   
PDB (IMB)3ZYJ   
PDB (RSDB)3ZYJ   
Structural Biology KnowledgeBase3ZYJ   
SCOP (Structural Classification of Proteins)3ZYJ   
CATH (Classification of proteins structures)3ZYJ   
SuperfamilyQ9Y2I2
Human Protein AtlasENSG00000162631
Peptide AtlasQ9Y2I2
HPRD16389
IPIIPI00412988   IPI00412989   IPI00479203   IPI00477903   IPI00478407   IPI00478746   IPI00745200   IPI00872401   IPI00552926   IPI00552409   IPI01012396   IPI01012862   IPI00552254   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2I2
IntAct (EBI)Q9Y2I2
FunCoupENSG00000162631
BioGRIDNTNG1
STRING (EMBL)NTNG1
ZODIACNTNG1
Ontologies - Pathways
QuickGOQ9Y2I2
Ontology : AmiGOprotein binding  extracellular region  plasma membrane  plasma membrane  C-terminal protein lipidation  axonogenesis  anchored component of plasma membrane  
Ontology : EGO-EBIprotein binding  extracellular region  plasma membrane  plasma membrane  C-terminal protein lipidation  axonogenesis  anchored component of plasma membrane  
Pathways : KEGGAxon guidance    Cell adhesion molecules (CAMs)   
NDEx NetworkNTNG1
Atlas of Cancer Signalling NetworkNTNG1
Wikipedia pathwaysNTNG1
Orthology - Evolution
OrthoDB22854
GeneTree (enSembl)ENSG00000162631
Phylogenetic Trees/Animal Genes : TreeFamNTNG1
HOVERGENQ9Y2I2
HOGENOMQ9Y2I2
Homologs : HomoloGeneNTNG1
Homology/Alignments : Family Browser (UCSC)NTNG1
Gene fusions - Rearrangements
Fusion : MitelmanFAM69A/NTNG1 [1p22.1/1p13.3]  [t(1;1)(p13;p22)]  
Fusion : MitelmanHSPG2/NTNG1 [1p36.12/1p13.3]  [t(1;1)(p13;p36)]  
Fusion : MitelmanMKL1/NTNG1 [22q13.1/1p13.3]  [t(1;22)(p13;q13)]  
Fusion : MitelmanNTNG1/BCAS1 [1p13.3/20q13.2]  [t(1;20)(p13;q13)]  
Fusion : MitelmanNTNG1/CALN1 [1p13.3/7q11.22]  [t(1;7)(p13;q11)]  
Fusion: TCGAFAM69A 1p22.1 NTNG1 1p13.3 BRCA
Fusion: TCGAHSPG2 1p36.12 NTNG1 1p13.3 LUAD
Fusion: TCGAMKL1 22q13.1 NTNG1 1p13.3 LUAD
Fusion: TCGANTNG1 1p13.3 CALN1 7q11.22 SKCM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNTNG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NTNG1
dbVarNTNG1
ClinVarNTNG1
1000_GenomesNTNG1 
Exome Variant ServerNTNG1
ExAC (Exome Aggregation Consortium)NTNG1 (select the gene name)
Genetic variants : HAPMAP22854
Genomic Variants (DGV)NTNG1 [DGVbeta]
DECIPHERNTNG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNTNG1 
Mutations
ICGC Data PortalNTNG1 
TCGA Data PortalNTNG1 
Broad Tumor PortalNTNG1
OASIS PortalNTNG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNTNG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNTNG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NTNG1
DgiDB (Drug Gene Interaction Database)NTNG1
DoCM (Curated mutations)NTNG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NTNG1 (select a term)
intoGenNTNG1
Cancer3DNTNG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608818   
Orphanet3164   
MedgenNTNG1
Genetic Testing Registry NTNG1
NextProtQ9Y2I2 [Medical]
TSGene22854
GENETestsNTNG1
Target ValidationNTNG1
Huge Navigator NTNG1 [HugePedia]
snp3D : Map Gene to Disease22854
BioCentury BCIQNTNG1
ClinGenNTNG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22854
Chemical/Pharm GKB GenePA164742200
Clinical trialNTNG1
Miscellaneous
canSAR (ICR)NTNG1 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNTNG1
EVEXNTNG1
GoPubMedNTNG1
iHOPNTNG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:47:34 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.