Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NTNG2 (netrin G2)

Identity

Alias (NCBI)LHLL9381
Lmnt2
NEDBASH
NTNG1
bA479K20.1
HGNC (Hugo) NTNG2
HGNC Alias symbKIAA1857
Lmnt2
HGNC Alias nameNetrin-G2
HGNC Previous nameNTNG1
HGNC Previous namenetrin G1
LocusID (NCBI) 84628
Atlas_Id 54514
Location 9q34.13  [Link to chromosome band 9q34]
Location_base_pair Starts at 132162058 and ends at 132244524 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NTNG2 (9q34.13) / LPIN1 (2p25.1)NUP153 (6p22.3) / NTNG2 (9q34.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)NTNG2   14288
Cards
Entrez_Gene (NCBI)NTNG2    netrin G2
AliasesLHLL9381; Lmnt2; NEDBASH; NTNG1; 
bA479K20.1
GeneCards (Weizmann)NTNG2
Ensembl hg19 (Hinxton)ENSG00000196358 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196358 [Gene_View]  ENSG00000196358 [Sequence]  chr9:132162058-132244524 [Contig_View]  NTNG2 [Vega]
ICGC DataPortalENSG00000196358
TCGA cBioPortalNTNG2
AceView (NCBI)NTNG2
Genatlas (Paris)NTNG2
SOURCE (Princeton)NTNG2
Genetics Home Reference (NIH)NTNG2
Genomic and cartography
GoldenPath hg38 (UCSC)NTNG2  -     chr9:132162058-132244524 +  9q34.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NTNG2  -     9q34.13   [Description]    (hg19-Feb_2009)
GoldenPathNTNG2 - 9q34.13 [CytoView hg19]  NTNG2 - 9q34.13 [CytoView hg38]
ImmunoBaseENSG00000196358
Genome Data Viewer NCBINTNG2 [Mapview hg19]  
OMIM618689   618718   
Gene and transcription
Genbank (Entrez)AB058760 AF131842 AY358165 BC013770 CK301008
RefSeq transcript (Entrez)NM_032536
Consensus coding sequences : CCDS (NCBI)NTNG2
Gene ExpressionNTNG2 [ NCBI-GEO ]   NTNG2 [ EBI - ARRAY_EXPRESS ]   NTNG2 [ SEEK ]   NTNG2 [ MEM ]
Gene Expression Viewer (FireBrowse)NTNG2 [ Firebrowse - Broad ]
GenevisibleExpression of NTNG2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84628
GTEX Portal (Tissue expression)NTNG2
Human Protein AtlasENSG00000196358-NTNG2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96CW9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96CW9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96CW9
PhosPhoSitePlusQ96CW9
Domaine pattern : Prosite (Expaxy)EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    EGF_LAM_1 (PS01248)    EGF_LAM_2 (PS50027)    LAMININ_NTER (PS51117)   
Domains : Interpro (EBI)EGF-like_dom    Laminin_EGF    Laminin_N    Laminin_N_sf   
Domain families : Pfam (Sanger)Laminin_EGF (PF00053)    Laminin_N (PF00055)   
Domain families : Pfam (NCBI)pfam00053    pfam00055   
Domain families : Smart (EMBL)EGF (SM00181)  EGF_Lam (SM00180)  LamNT (SM00136)  
Conserved Domain (NCBI)NTNG2
PDB (RSDB)3TBD    3ZYG    3ZYI   
PDB Europe3TBD    3ZYG    3ZYI   
PDB (PDBSum)3TBD    3ZYG    3ZYI   
PDB (IMB)3TBD    3ZYG    3ZYI   
Structural Biology KnowledgeBase3TBD    3ZYG    3ZYI   
SCOP (Structural Classification of Proteins)3TBD    3ZYG    3ZYI   
CATH (Classification of proteins structures)3TBD    3ZYG    3ZYI   
SuperfamilyQ96CW9
AlphaFold pdb e-kbQ96CW9   
Human Protein Atlas [tissue]ENSG00000196358-NTNG2 [tissue]
HPRD17650
Protein Interaction databases
DIP (DOE-UCLA)Q96CW9
IntAct (EBI)Q96CW9
BioGRIDNTNG2
STRING (EMBL)NTNG2
ZODIACNTNG2
Ontologies - Pathways
QuickGOQ96CW9
Ontology : AmiGOmolecular_function  protein binding  extracellular region  plasma membrane  plasma membrane  axonogenesis  animal organ morphogenesis  tissue development  regulation of neuron projection development  cell migration  axon  substrate adhesion-dependent cell spreading  laminin complex  intercellular bridge  anchored component of plasma membrane  modulation of chemical synaptic transmission  basement membrane assembly  Flemming body  Schaffer collateral - CA1 synapse  postsynaptic specialization assembly  glutamatergic synapse  anchored component of presynaptic active zone membrane  synaptic membrane adhesion  regulation of neuron projection arborization  regulation of presynapse assembly  regulation of neuron migration  
Ontology : EGO-EBImolecular_function  protein binding  extracellular region  plasma membrane  plasma membrane  axonogenesis  animal organ morphogenesis  tissue development  regulation of neuron projection development  cell migration  axon  substrate adhesion-dependent cell spreading  laminin complex  intercellular bridge  anchored component of plasma membrane  modulation of chemical synaptic transmission  basement membrane assembly  Flemming body  Schaffer collateral - CA1 synapse  postsynaptic specialization assembly  glutamatergic synapse  anchored component of presynaptic active zone membrane  synaptic membrane adhesion  regulation of neuron projection arborization  regulation of presynapse assembly  regulation of neuron migration  
Pathways : KEGGAxon guidance    Cell adhesion molecules (CAMs)   
NDEx NetworkNTNG2
Atlas of Cancer Signalling NetworkNTNG2
Wikipedia pathwaysNTNG2
Orthology - Evolution
OrthoDB84628
GeneTree (enSembl)ENSG00000196358
Phylogenetic Trees/Animal Genes : TreeFamNTNG2
Homologs : HomoloGeneNTNG2
Homology/Alignments : Family Browser (UCSC)NTNG2
Gene fusions - Rearrangements
Fusion : MitelmanNTNG2/LPIN1 [9q34.13/2p25.1]  
Fusion : MitelmanNUP153/NTNG2 [6p22.3/9q34.13]  
Fusion : QuiverNTNG2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNTNG2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NTNG2
dbVarNTNG2
ClinVarNTNG2
MonarchNTNG2
1000_GenomesNTNG2 
Exome Variant ServerNTNG2
GNOMAD BrowserENSG00000196358
Varsome BrowserNTNG2
ACMGNTNG2 variants
VarityQ96CW9
Genomic Variants (DGV)NTNG2 [DGVbeta]
DECIPHERNTNG2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNTNG2 
Mutations
ICGC Data PortalNTNG2 
TCGA Data PortalNTNG2 
Broad Tumor PortalNTNG2
OASIS PortalNTNG2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNTNG2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNTNG2
Mutations and Diseases : HGMDNTNG2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaNTNG2
DgiDB (Drug Gene Interaction Database)NTNG2
DoCM (Curated mutations)NTNG2
CIViC (Clinical Interpretations of Variants in Cancer)NTNG2
Cancer3DNTNG2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM618689    618718   
Orphanet
DisGeNETNTNG2
MedgenNTNG2
Genetic Testing Registry NTNG2
NextProtQ96CW9 [Medical]
GENETestsNTNG2
Target ValidationNTNG2
Huge Navigator NTNG2 [HugePedia]
ClinGenNTNG2
Clinical trials, drugs, therapy
MyCancerGenomeNTNG2
Protein Interactions : CTDNTNG2
Pharm GKB GenePA134962540
PharosQ96CW9
Clinical trialNTNG2
Miscellaneous
canSAR (ICR)NTNG2
HarmonizomeNTNG2
DataMed IndexNTNG2
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNTNG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:23:26 CEST 2021

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