Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NTNG2 (netrin G2)

Identity

Alias_namesNTNG1
netrin G1
Alias_symbol (synonym)KIAA1857
Lmnt2
Other aliasLHLL9381
bA479K20.1
HGNC (Hugo) NTNG2
LocusID (NCBI) 84628
Atlas_Id 54514
Location 9q34.13  [Link to chromosome band 9q34]
Location_base_pair Starts at 132161947 and ends at 132242833 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NTNG2 (9q34.13) / LPIN1 (2p25.1)NUP153 (6p22.3) / NTNG2 (9q34.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NTNG2   14288
Cards
Entrez_Gene (NCBI)NTNG2  84628  netrin G2
AliasesLHLL9381; Lmnt2; NTNG1; bA479K20.1
GeneCards (Weizmann)NTNG2
Ensembl hg19 (Hinxton)ENSG00000196358 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196358 [Gene_View]  chr9:132161947-132242833 [Contig_View]  NTNG2 [Vega]
ICGC DataPortalENSG00000196358
TCGA cBioPortalNTNG2
AceView (NCBI)NTNG2
Genatlas (Paris)NTNG2
WikiGenes84628
SOURCE (Princeton)NTNG2
Genetics Home Reference (NIH)NTNG2
Genomic and cartography
GoldenPath hg38 (UCSC)NTNG2  -     chr9:132161947-132242833 +  9q34.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NTNG2  -     9q34.13   [Description]    (hg19-Feb_2009)
EnsemblNTNG2 - 9q34.13 [CytoView hg19]  NTNG2 - 9q34.13 [CytoView hg38]
Mapping of homologs : NCBINTNG2 [Mapview hg19]  NTNG2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB058760 AF131842 AY358165 BC013770
RefSeq transcript (Entrez)NM_032536
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NTNG2
Cluster EST : UnigeneHs.163642 [ NCBI ]
CGAP (NCI)Hs.163642
Alternative Splicing GalleryENSG00000196358
Gene ExpressionNTNG2 [ NCBI-GEO ]   NTNG2 [ EBI - ARRAY_EXPRESS ]   NTNG2 [ SEEK ]   NTNG2 [ MEM ]
Gene Expression Viewer (FireBrowse)NTNG2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84628
GTEX Portal (Tissue expression)NTNG2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96CW9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96CW9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96CW9
Splice isoforms : SwissVarQ96CW9
PhosPhoSitePlusQ96CW9
Domaine pattern : Prosite (Expaxy)EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    EGF_LAM_1 (PS01248)    EGF_LAM_2 (PS50027)    LAMININ_NTER (PS51117)   
Domains : Interpro (EBI)EGF-like_CS    EGF-like_dom    Laminin_EGF    Laminin_N   
Domain families : Pfam (Sanger)Laminin_EGF (PF00053)    Laminin_N (PF00055)   
Domain families : Pfam (NCBI)pfam00053    pfam00055   
Domain families : Smart (EMBL)EGF (SM00181)  EGF_Lam (SM00180)  LamNT (SM00136)  
Conserved Domain (NCBI)NTNG2
DMDM Disease mutations84628
Blocks (Seattle)NTNG2
PDB (SRS)3TBD    3ZYG    3ZYI   
PDB (PDBSum)3TBD    3ZYG    3ZYI   
PDB (IMB)3TBD    3ZYG    3ZYI   
PDB (RSDB)3TBD    3ZYG    3ZYI   
Structural Biology KnowledgeBase3TBD    3ZYG    3ZYI   
SCOP (Structural Classification of Proteins)3TBD    3ZYG    3ZYI   
CATH (Classification of proteins structures)3TBD    3ZYG    3ZYI   
SuperfamilyQ96CW9
Human Protein AtlasENSG00000196358
Peptide AtlasQ96CW9
HPRD17650
IPIIPI00843936   IPI00432766   IPI00478246   IPI00647807   
Protein Interaction databases
DIP (DOE-UCLA)Q96CW9
IntAct (EBI)Q96CW9
FunCoupENSG00000196358
BioGRIDNTNG2
STRING (EMBL)NTNG2
ZODIACNTNG2
Ontologies - Pathways
QuickGOQ96CW9
Ontology : AmiGOmolecular_function  protein binding  extracellular region  plasma membrane  C-terminal protein lipidation  axonogenesis  axon  anchored component of plasma membrane  
Ontology : EGO-EBImolecular_function  protein binding  extracellular region  plasma membrane  C-terminal protein lipidation  axonogenesis  axon  anchored component of plasma membrane  
Pathways : KEGGAxon guidance    Cell adhesion molecules (CAMs)   
NDEx NetworkNTNG2
Atlas of Cancer Signalling NetworkNTNG2
Wikipedia pathwaysNTNG2
Orthology - Evolution
OrthoDB84628
GeneTree (enSembl)ENSG00000196358
Phylogenetic Trees/Animal Genes : TreeFamNTNG2
HOVERGENQ96CW9
HOGENOMQ96CW9
Homologs : HomoloGeneNTNG2
Homology/Alignments : Family Browser (UCSC)NTNG2
Gene fusions - Rearrangements
Fusion : MitelmanNTNG2/LPIN1 [9q34.13/2p25.1]  
Fusion : MitelmanNUP153/NTNG2 [6p22.3/9q34.13]  [t(6;9)(p22;q34)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNTNG2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NTNG2
dbVarNTNG2
ClinVarNTNG2
1000_GenomesNTNG2 
Exome Variant ServerNTNG2
ExAC (Exome Aggregation Consortium)NTNG2 (select the gene name)
Genetic variants : HAPMAP84628
Genomic Variants (DGV)NTNG2 [DGVbeta]
DECIPHERNTNG2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNTNG2 
Mutations
ICGC Data PortalNTNG2 
TCGA Data PortalNTNG2 
Broad Tumor PortalNTNG2
OASIS PortalNTNG2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNTNG2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNTNG2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NTNG2
DgiDB (Drug Gene Interaction Database)NTNG2
DoCM (Curated mutations)NTNG2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NTNG2 (select a term)
intoGenNTNG2
Cancer3DNTNG2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNTNG2
Genetic Testing Registry NTNG2
NextProtQ96CW9 [Medical]
TSGene84628
GENETestsNTNG2
Target ValidationNTNG2
Huge Navigator NTNG2 [HugePedia]
snp3D : Map Gene to Disease84628
BioCentury BCIQNTNG2
ClinGenNTNG2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84628
Chemical/Pharm GKB GenePA134962540
Clinical trialNTNG2
Miscellaneous
canSAR (ICR)NTNG2 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNTNG2
EVEXNTNG2
GoPubMedNTNG2
iHOPNTNG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:09:31 CEST 2017

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