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NTS (neurotensin)

Identity

Other aliasNMN-125
NN
NT
NT/N
NTS1
HGNC (Hugo) NTS
LocusID (NCBI) 4922
Atlas_Id 46378
Location 12q21.31  [Link to chromosome band 12q21]
Location_base_pair Starts at 86268073 and ends at 86276770 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NTS   8038
Cards
Entrez_Gene (NCBI)NTS  4922  neurotensin
AliasesNMN-125; NN; NT; NT/N; 
NTS1
GeneCards (Weizmann)NTS
Ensembl hg19 (Hinxton)ENSG00000133636 [Gene_View]  chr12:86268073-86276770 [Contig_View]  NTS [Vega]
Ensembl hg38 (Hinxton)ENSG00000133636 [Gene_View]  chr12:86268073-86276770 [Contig_View]  NTS [Vega]
ICGC DataPortalENSG00000133636
TCGA cBioPortalNTS
AceView (NCBI)NTS
Genatlas (Paris)NTS
WikiGenes4922
SOURCE (Princeton)NTS
Genetics Home Reference (NIH)NTS
Genomic and cartography
GoldenPath hg19 (UCSC)NTS  -     chr12:86268073-86276770 +  12q21.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NTS  -     12q21.31   [Description]    (hg38-Dec_2013)
EnsemblNTS - 12q21.31 [CytoView hg19]  NTS - 12q21.31 [CytoView hg38]
Mapping of homologs : NCBINTS [Mapview hg19]  NTS [Mapview hg38]
OMIM162650   
Gene and transcription
Genbank (Entrez)AF157682 AK312066 AW571577 BC010918 CR541936
RefSeq transcript (Entrez)NM_006183
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)NTS
Cluster EST : UnigeneHs.80962 [ NCBI ]
CGAP (NCI)Hs.80962
Alternative Splicing GalleryENSG00000133636
Gene ExpressionNTS [ NCBI-GEO ]   NTS [ EBI - ARRAY_EXPRESS ]   NTS [ SEEK ]   NTS [ MEM ]
Gene Expression Viewer (FireBrowse)NTS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4922
GTEX Portal (Tissue expression)NTS
Protein : pattern, domain, 3D structure
UniProt/SwissProtP30990   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP30990  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP30990
Splice isoforms : SwissVarP30990
PhosPhoSitePlusP30990
Domains : Interpro (EBI)NeurotensiN   
Domain families : Pfam (Sanger)Pro-NT_NN (PF07421)   
Domain families : Pfam (NCBI)pfam07421   
Domain structure : Prodom (Prabi Lyon)NeurotensiN (PD016590)   
Conserved Domain (NCBI)NTS
DMDM Disease mutations4922
Blocks (Seattle)NTS
PDB (SRS)2LNE    2LNF    2LNG    2LYW    2OYV    2OYW    3F6K    4PO7   
PDB (PDBSum)2LNE    2LNF    2LNG    2LYW    2OYV    2OYW    3F6K    4PO7   
PDB (IMB)2LNE    2LNF    2LNG    2LYW    2OYV    2OYW    3F6K    4PO7   
PDB (RSDB)2LNE    2LNF    2LNG    2LYW    2OYV    2OYW    3F6K    4PO7   
Structural Biology KnowledgeBase2LNE    2LNF    2LNG    2LYW    2OYV    2OYW    3F6K    4PO7   
SCOP (Structural Classification of Proteins)2LNE    2LNF    2LNG    2LYW    2OYV    2OYW    3F6K    4PO7   
CATH (Classification of proteins structures)2LNE    2LNF    2LNG    2LYW    2OYV    2OYW    3F6K    4PO7   
SuperfamilyP30990
Human Protein AtlasENSG00000133636
Peptide AtlasP30990
HPRD08878
IPIIPI00028158   IPI01020700   IPI01020845   
Protein Interaction databases
DIP (DOE-UCLA)P30990
IntAct (EBI)P30990
FunCoupENSG00000133636
BioGRIDNTS
STRING (EMBL)NTS
ZODIACNTS
Ontologies - Pathways
QuickGOP30990
Ontology : AmiGOliver development  response to amphetamine  neuropeptide hormone activity  protein binding  extracellular region  hyperosmotic response  signal transduction  visual learning  transport vesicle  response to estradiol  response to cocaine  neuronal cell body  axon terminus  digestive tract development  response to axon injury  regulation of blood vessel size  response to corticosterone  cellular response to lithium ion  cellular response to dexamethasone stimulus  response to antipsychotic drug  cellular response to nerve growth factor stimulus  
Ontology : EGO-EBIliver development  response to amphetamine  neuropeptide hormone activity  protein binding  extracellular region  hyperosmotic response  signal transduction  visual learning  transport vesicle  response to estradiol  response to cocaine  neuronal cell body  axon terminus  digestive tract development  response to axon injury  regulation of blood vessel size  response to corticosterone  cellular response to lithium ion  cellular response to dexamethasone stimulus  response to antipsychotic drug  cellular response to nerve growth factor stimulus  
NDEx NetworkNTS
Atlas of Cancer Signalling NetworkNTS
Wikipedia pathwaysNTS
Orthology - Evolution
OrthoDB4922
GeneTree (enSembl)ENSG00000133636
Phylogenetic Trees/Animal Genes : TreeFamNTS
HOVERGENP30990
HOGENOMP30990
Homologs : HomoloGeneNTS
Homology/Alignments : Family Browser (UCSC)NTS
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNTS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NTS
dbVarNTS
ClinVarNTS
1000_GenomesNTS 
Exome Variant ServerNTS
ExAC (Exome Aggregation Consortium)NTS (select the gene name)
Genetic variants : HAPMAP4922
Genomic Variants (DGV)NTS [DGVbeta]
DECIPHER (Syndromes)12:86268073-86276770  ENSG00000133636
CONAN: Copy Number AnalysisNTS 
Mutations
ICGC Data PortalNTS 
TCGA Data PortalNTS 
Broad Tumor PortalNTS
OASIS PortalNTS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNTS  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNTS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NTS
DgiDB (Drug Gene Interaction Database)NTS
DoCM (Curated mutations)NTS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NTS (select a term)
intoGenNTS
Cancer3DNTS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM162650   
Orphanet
MedgenNTS
Genetic Testing Registry NTS
NextProtP30990 [Medical]
TSGene4922
GENETestsNTS
Huge Navigator NTS [HugePedia]
snp3D : Map Gene to Disease4922
BioCentury BCIQNTS
ClinGenNTS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4922
Chemical/Pharm GKB GenePA31820
Clinical trialNTS
Miscellaneous
canSAR (ICR)NTS (select the gene name)
Probes
Litterature
PubMed83 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNTS
EVEXNTS
GoPubMedNTS
iHOPNTS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:12:50 CEST 2017

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