Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NUAK1 (NUAK family, SNF1-like kinase, 1)

Written2014-03Fumika Inazuka, Hiroyasu Esumi
Research Institute for Biomedical Sciences, Tokyo University of Science, Japan

(Note : for Links provided by Atlas : click)

Identity

Alias_namesNUAK family
Alias_symbol (synonym)ARK5
KIAA0537
NuaK1
Other alias
HGNC (Hugo) NUAK1
LocusID (NCBI) 9891
Atlas_Id 46275
Location 12q23.3  [Link to chromosome band 12q23]
Location_base_pair Starts at 106063347 and ends at 106140033 bp from pter ( according to hg19-Feb_2009)  [Mapping NUAK1.png]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARL17A (17q21.31) / NUAK1 (12q23.3)NUAK1 (12q23.3) / MTHFR (1p36.22)
Note Details concerning the local order of the human NUAK1 locus can be found at ensembl.org. Human NUAK1 is found on chromosome 12 at position 106457118-106533811. Mouse NUAK1 is located on chromosome 10 at position 84370905-84440597.

DNA/RNA

 
  The human NUAK1 gene has four splice variants. NUAK1-001 is composed of seven exons, which spans 6828 bp and encodes a 661-aa protein. NUAK1-003 is composed of two exons including one non-coding exon, which spans 547 bp and encodes a 118-aa protein. NUAK1-004 is composed of five exons, which spans 560 bp and encodes a 152-aa protein. NUAK1-005 is composed of four exons including two non-coding exons, which spans 569 bp and encodes a 74-aa protein (see Ensembl ENSG00000074590). Open boxes indicate untranslated regions and shaded boxes indicate coding regions of the gene.
Description The human NUAK1 gene is composed of seven exons and spans approximately 76.7 kbp of genomic DNA.
Transcription The human NUAK1 gene encodes a 6828-bp mRNA. The coding region contains 1986 bp. Three short splice variants (547-569 bp) have been reported.
Pseudogene No pseudogenes are known.

Protein

 
  The catalytic domain of NUAK1 protein is located in the N-terminal at residues 55 to 306. K84 is an ATP binding site. T211 is phosphorylated by LKB1, which activates NUAK1 (Lizcano et al., 2004). W305 is required for binding of USP9X (Al-Hakim et al., 2008). The GILK motif is a direct binding site for protein phosphatase PPP1CB (Zagorska et al., 2010).
Description NUAK1 protein consists of 661 amino acids and has a molecular weight of 74 kDa (Nagase et al., 1998). NUAK1 contains a serine/threonine-protein kinase domain at its N-terminus that is conserved among AMPKalphas and AMPK-related kinases (AMPK-RKs) (Manning et al., 2002). The same as the AMPKalphas and most other AMPK-RKs, NUAK1 can be phosphorylated by tumor suppressor LKB1 at a conserved threonine residue (corresponding to Thr-211 in NUAK1) in the T-loop of the catalytic domain, which activates the kinase activity of NUAK1 (Lizcano et al., 2004). The phosphorylation at Thr-211 is prevented by atypical Lys29/ Lys33-linked polyubiquitin chains, which can be removed by the de-ubiquitinating enzyme USP9X (Al-Hakim et al., 2008).
Expression NUAK1 is preferentially expressed in highly oxidative tissues such as cerebrum, heart, and soleus muscle in human and mouse (Nagase et al., 1998; Inazuka et al., 2012). In mouse embryogenesis, NUAK1 is prominently expressed in the neuroectoderm during neurulation, and in the cerebral cortex after the late embryonic stage (Ohmura et al., 2012; Courchet et al., 2013). In C2C12 mouse myoblasts, NUAK1 is increasingly expressed as the cells differentiate into myotubes (Niesler et al., 2007). The elevated expression of NUAK1 has been observed in clinical samples obtained from colorectal cancers, pancreatic cancers, hepatocellular carcinomas, gliomas, and angioimmunoblastic T-cell lymphomas (Kusakai et al., 2004a; Morito et al., 2006; Liu et al., 2012; Cui et al., 2013).
Localisation NUAK1 is found in both the cytoplasm and nucleus.
Function In HEK293 cells NUAK1 phosphorylates myosin phosphatase regulator MYPT1, which inhibits the activity of a MYPT1-PPP1CB phosphatase complex, enhancing cell detachment (Zagorska et al., 2010). In WI-38 fetal lung fibroblasts and MCF10A immortalized mammary epithelial cells NUAK1 phosphorylates the cyclin-dependent protein kinase regulator LATS1, which leads to destabilization of LATS1 and induces aneuploidy, resulting in cellular senescence in a cellular context-dependent manner (Humbert et al., 2010). In A549 lung adenocarcinoma cells NUAK1 acts as a transcriptional coactivator in a complex with LKB1 and a tumor suppressor p53, which induces cell cycle G1 arrest (Hou et al., 2011).
In mice, NUAK1 is essential for closure of the ventral body wall in developing embryos (Hirano et al., 2006). NUAK1 and NUAK2 function in a complementary manner in the apical constriction and apico-basal elongation during early embryogenesis (Ohmura et al., 2012). The LKB1-NUAK1 pathway regulates cortical axon branching by immobilizing mitochondria at nascent presynaptic sites during postnatal neuronal development (Courchet et al., 2013). NUAK1 has a role in the negative feedback regulation of insulin signaling, which is involved in glucose intolerance under high-fat diet conditions (Inazuka et al., 2012).
In Caenorhabditis elegans, UNC-82, an ortholog of NUAK1 and NUAK2, maintains the organization of cytoskeletal structure during cell-shape change presumably through phosphorylation of myosin and paramyosin (Hoppe et al., 2010).
Homology NUAK1 has the highest homology to NUAK2, whose similarity in the protein as a whole is 58%, and 82% in the kinase domain in human. Homo sapiens NUAK1 is 91% similar to Mus musculus NUAK1, 75% similar to Xenopus tropicalis NUAK1, and 65% similar to Caenorhabditis elegans UNC-82.

Mutations

Somatic A C-to-T transition at residues 661 in the NUAK1 gene that results in a Pro-to-Ser substitution at codon 221 (P221S) has been found in tissue samples from human colorectal carcinomas and melanomas (Cancer Genome Atlas Network, 2012; Krauthammer et al., 2012).

Implicated in

Note
  
Entity Glioma
Disease Malignant gliomas are the most common type of primary brain tumor in adults. Glioma cells are highly proliferative, thereby readily invading surrounding brain structures. Thus, complete surgical resection is practically impossible (Stewart, 2002). Glioma infiltration occurs through the activation of matrix metalloproteinases (MMPs). MMPs also exhibit a function in angiogenesis during tumor neovascularization (Forsyth et al., 1999; Das et al., 2011).
Prognosis Up-regulation of NUAK1 correlates with the World Health Organization grades of glioma (P < 0.001). High NUAK1 expression was markedly associated with reduced overall survival in grade II glioma (P < 0.01). The median survival time of patients with high NUAK1 expression (18.37 months, 95% confidence interval (CI): 15.95-20.04) was significantly shorter than that of patients with low NUAK1 expression level (43.80 months, 95% CI: 23.47-48.36). The same conclusions were obtained in grades III and IV gliomas, indicating that NUAK1 is a valuable prognostic marker for glioma patients at all disease stages (Lu et al., 2013).
Oncogenesis In several kinds of glioma cell lines, NUAK1 promotes IGF-1-induced cell invasion, in which NUAK1 mediates cytoskeleton rearrangement through activation of LIMK1 and cofilin and activates MMP-2 and MMP-9 through production of MT1-MMP. Knockdown of NUAK1 reduces brain invasion in mice with glioma xenografts (Lu et al., 2013).
  
  
Entity Colorectal cancer (CRC)
Disease CRC is the third leading cancer and the fourth leading cause of cancer deaths worldwide (Karsa et al., 2010). Various genetic changes, including APC mutation, mismatch repair defects, Wnt-activated alterations, RAF-mediated alterations, and p53 alterations are concurrently observed in CRC. These mutations are interconnected to generate diverse pathways of colorectal tumorigenesis (Conlin et al., 2005; Roh et al., 2010). In addition, MMPs are overexpressed in colorectal tumors and involved in degrading components of the basement membrane during the progression of CRC (Collins et al., 2001; Dragutinovic et al., 2011).
Prognosis Higher expression of NUAK1 is observed in advanced cases, and much higher expression is observed in liver metastases (Kusakai et al., 2004b; Roh et al., 2010). The expression of NUAK1 is closely associated with that of MMP-2 and MMP-9. Enhanced expression of NUAK1 is more frequent in tumors with RAF-mediated alterations (P = 0.001) or crossover pathways carrying both APC/Wnt-activated and mismatch repair/RAF-mediated alterations (P = 0.003) than those without them (Roh et al., 2010).
Oncogenesis Higher NUAK1 expression is concordant with higher invasion activity in human colorectal cancer cell lines (Kusakai et al., 2004a; Kusakai et al., 2004b). Knockdown of NUAK1 suppresses growth of CRC xenografts in mice (Liu et al., 2012).
  
  
Entity Hepatocellular carcinoma (HCC)
Disease HCC is the fifth most common cancer and the third most frequent cause of death of cancer worldwide. Liver resection is considered to be the mainly curative therapy for HCC, with about 50-70% 5-year overall survival after curative hepatectomy. However, the postoperative recurrence rate remains as high as 70-83.7% (Bruix and Sherman, 2005; Llovet, 2005).
Prognosis In HCC, the high expression of NUAK1 is related to tumor size (P=0.005), histological differentiation (P=0.047), tumor stage (P=0.005), and a significantly poor prognosis. Multivariate analysis identified the level of NUAK1 expression as an independent predictor of the overall survival rate of patients with HCC (Cui et al., 2013).
Oncogenesis Several cancer cell lines including HCC which are expressed oncogenic levels of MYC establish a dependence on NUAK1 for maintaining metabolic homeostasis and for cell survival, in which NUAK1 restrains mTOR signaling via suppression of proteasomal degradation of AMPKbeta and also maintains expression of mitochondrial respiratory chain complexes. Knockdown of NUAK1 prevents tumorigenesis in MYC-driven mouse models of HCC. Depletion of NUAK1 after tumorigenesis also suppresses tumor growth and provides a survival advantage to the mice (P < 0.01) (Liu et al., 2012).
  

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Citation

This paper should be referenced as such :
F Inazuka, H Esumi
NUAK1 (NUAK family, SNF1-like kinase, 1)
Atlas Genet Cytogenet Oncol Haematol. 2014;18(11):834-837.
Free journal version : [ pdf ]   [ DOI ]
On line version : http://AtlasGeneticsOncology.org/Genes/NUAK1ID46275ch12q23.html


External links

Nomenclature
HGNC (Hugo)NUAK1   14311
Cards
AtlasNUAK1ID46275ch12q23
Entrez_Gene (NCBI)NUAK1  9891  NUAK family kinase 1
AliasesARK5
GeneCards (Weizmann)NUAK1
Ensembl hg19 (Hinxton)ENSG00000074590 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000074590 [Gene_View]  chr12:106063347-106140033 [Contig_View]  NUAK1 [Vega]
ICGC DataPortalENSG00000074590
TCGA cBioPortalNUAK1
AceView (NCBI)NUAK1
Genatlas (Paris)NUAK1
WikiGenes9891
SOURCE (Princeton)NUAK1
Genetics Home Reference (NIH)NUAK1
Genomic and cartography
GoldenPath hg38 (UCSC)NUAK1  -     chr12:106063347-106140033 -  12q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUAK1  -     12q23.3   [Description]    (hg19-Feb_2009)
EnsemblNUAK1 - 12q23.3 [CytoView hg19]  NUAK1 - 12q23.3 [CytoView hg38]
Mapping of homologs : NCBINUAK1 [Mapview hg19]  NUAK1 [Mapview hg38]
OMIM608130   
Gene and transcription
Genbank (Entrez)AB011109 AK027302 AK289992 BC152462 BC160165
RefSeq transcript (Entrez)NM_014840
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NUAK1
Cluster EST : UnigeneHs.524692 [ NCBI ]
CGAP (NCI)Hs.524692
Alternative Splicing GalleryENSG00000074590
Gene ExpressionNUAK1 [ NCBI-GEO ]   NUAK1 [ EBI - ARRAY_EXPRESS ]   NUAK1 [ SEEK ]   NUAK1 [ MEM ]
Gene Expression Viewer (FireBrowse)NUAK1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9891
GTEX Portal (Tissue expression)NUAK1
Human Protein AtlasENSG00000074590-NUAK1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60285   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60285  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60285
Splice isoforms : SwissVarO60285
Catalytic activity : Enzyme2.7.11.1 [ Enzyme-Expasy ]   2.7.11.12.7.11.1 [ IntEnz-EBI ]   2.7.11.1 [ BRENDA ]   2.7.11.1 [ KEGG ]   
PhosPhoSitePlusO60285
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domains : Interpro (EBI)Kinase-like_dom    Prot_kinase_dom    Protein_kinase_ATP_BS    Ser/Thr_kinase_AS   
Domain families : Pfam (Sanger)Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00069   
Domain families : Smart (EMBL)S_TKc (SM00220)  
Conserved Domain (NCBI)NUAK1
DMDM Disease mutations9891
Blocks (Seattle)NUAK1
SuperfamilyO60285
Human Protein Atlas [tissue]ENSG00000074590-NUAK1 [tissue]
Peptide AtlasO60285
HPRD12171
IPIIPI00028566   IPI00386903   IPI01012972   IPI01021976   IPI01022411   IPI01021079   
Protein Interaction databases
DIP (DOE-UCLA)O60285
IntAct (EBI)O60285
FunCoupENSG00000074590
BioGRIDNUAK1
STRING (EMBL)NUAK1
ZODIACNUAK1
Ontologies - Pathways
QuickGOO60285
Ontology : AmiGOfibrillar center  p53 binding  protein serine/threonine kinase activity  protein serine/threonine kinase activity  protein binding  ATP binding  nucleus  nucleoplasm  cytoplasm  protein phosphorylation  cellular response to DNA damage stimulus  cell adhesion  microtubule cytoskeleton  regulation of cell adhesion  regulation of myosin-light-chain-phosphatase activity  intracellular signal transduction  regulation of cell proliferation  metal ion binding  regulation of signal transduction by p53 class mediator  regulation of cellular senescence  
Ontology : EGO-EBIfibrillar center  p53 binding  protein serine/threonine kinase activity  protein serine/threonine kinase activity  protein binding  ATP binding  nucleus  nucleoplasm  cytoplasm  protein phosphorylation  cellular response to DNA damage stimulus  cell adhesion  microtubule cytoskeleton  regulation of cell adhesion  regulation of myosin-light-chain-phosphatase activity  intracellular signal transduction  regulation of cell proliferation  metal ion binding  regulation of signal transduction by p53 class mediator  regulation of cellular senescence  
REACTOMEO60285 [protein]
REACTOME PathwaysR-HSA-6804756 [pathway]   
NDEx NetworkNUAK1
Atlas of Cancer Signalling NetworkNUAK1
Wikipedia pathwaysNUAK1
Orthology - Evolution
OrthoDB9891
GeneTree (enSembl)ENSG00000074590
Phylogenetic Trees/Animal Genes : TreeFamNUAK1
HOVERGENO60285
HOGENOMO60285
Homologs : HomoloGeneNUAK1
Homology/Alignments : Family Browser (UCSC)NUAK1
Gene fusions - Rearrangements
Tumor Fusion PortalNUAK1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUAK1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUAK1
dbVarNUAK1
ClinVarNUAK1
1000_GenomesNUAK1 
Exome Variant ServerNUAK1
ExAC (Exome Aggregation Consortium)ENSG00000074590
GNOMAD BrowserENSG00000074590
Genetic variants : HAPMAP9891
Genomic Variants (DGV)NUAK1 [DGVbeta]
DECIPHERNUAK1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUAK1 
Mutations
ICGC Data PortalNUAK1 
TCGA Data PortalNUAK1 
Broad Tumor PortalNUAK1
OASIS PortalNUAK1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNUAK1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUAK1
DgiDB (Drug Gene Interaction Database)NUAK1
DoCM (Curated mutations)NUAK1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUAK1 (select a term)
intoGenNUAK1
NCG5 (London)NUAK1
Cancer3DNUAK1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608130   
Orphanet
DisGeNETNUAK1
MedgenNUAK1
Genetic Testing Registry NUAK1
NextProtO60285 [Medical]
TSGene9891
GENETestsNUAK1
Target ValidationNUAK1
Huge Navigator NUAK1 [HugePedia]
snp3D : Map Gene to Disease9891
BioCentury BCIQNUAK1
ClinGenNUAK1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9891
Chemical/Pharm GKB GenePA142671242
Clinical trialNUAK1
Miscellaneous
canSAR (ICR)NUAK1 (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUAK1
EVEXNUAK1
GoPubMedNUAK1
iHOPNUAK1
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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