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NUBP1 (nucleotide binding protein 1)

Identity

Alias_namesNBP1
nucleotide binding protein 1 (E.coli MinD like)
nucleotide binding protein 1 (MinD homolog, E. coli)
Alias_symbol (synonym)NBP35
Other aliasNBP
HGNC (Hugo) NUBP1
LocusID (NCBI) 4682
Atlas_Id 71009
Location 16p13.13  [Link to chromosome band 16p13]
Location_base_pair Starts at 10743786 and ends at 10769351 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CREBBP (16p13.3) / NUBP1 (16p13.13)NUBP1 (16p13.13) / UMODL1 (21q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUBP1   8041
Cards
Entrez_Gene (NCBI)NUBP1  4682  nucleotide binding protein 1
AliasesNBP; NBP1; NBP35
GeneCards (Weizmann)NUBP1
Ensembl hg19 (Hinxton)ENSG00000103274 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103274 [Gene_View]  chr16:10743786-10769351 [Contig_View]  NUBP1 [Vega]
ICGC DataPortalENSG00000103274
TCGA cBioPortalNUBP1
AceView (NCBI)NUBP1
Genatlas (Paris)NUBP1
WikiGenes4682
SOURCE (Princeton)NUBP1
Genetics Home Reference (NIH)NUBP1
Genomic and cartography
GoldenPath hg38 (UCSC)NUBP1  -     chr16:10743786-10769351 +  16p13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUBP1  -     16p13.13   [Description]    (hg19-Feb_2009)
EnsemblNUBP1 - 16p13.13 [CytoView hg19]  NUBP1 - 16p13.13 [CytoView hg38]
Mapping of homologs : NCBINUBP1 [Mapview hg19]  NUBP1 [Mapview hg38]
OMIM600280   
Gene and transcription
Genbank (Entrez)AK223204 AK307148 AK310089 BC100290 BC109322
RefSeq transcript (Entrez)NM_001278506 NM_001323594 NM_001323595 NM_001323596 NM_001323597 NM_002484
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NUBP1
Cluster EST : UnigeneHs.81469 [ NCBI ]
CGAP (NCI)Hs.81469
Alternative Splicing GalleryENSG00000103274
Gene ExpressionNUBP1 [ NCBI-GEO ]   NUBP1 [ EBI - ARRAY_EXPRESS ]   NUBP1 [ SEEK ]   NUBP1 [ MEM ]
Gene Expression Viewer (FireBrowse)NUBP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4682
GTEX Portal (Tissue expression)NUBP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP53384   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP53384  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP53384
Splice isoforms : SwissVarP53384
PhosPhoSitePlusP53384
Domaine pattern : Prosite (Expaxy)MRP (PS01215)   
Domains : Interpro (EBI)AAA+_ATPase    Mrp/NBP35_ATP-bd    Mrp_CS    NUBP1/Nbp35    P-loop_NTPase    YlxH/NBP35   
Domain families : Pfam (Sanger)ParA (PF10609)   
Domain families : Pfam (NCBI)pfam10609   
Domain families : Smart (EMBL)AAA (SM00382)  
Conserved Domain (NCBI)NUBP1
DMDM Disease mutations4682
Blocks (Seattle)NUBP1
SuperfamilyP53384
Human Protein AtlasENSG00000103274
Peptide AtlasP53384
HPRD02611
IPIIPI00021277   IPI00869040   
Protein Interaction databases
DIP (DOE-UCLA)P53384
IntAct (EBI)P53384
FunCoupENSG00000103274
BioGRIDNUBP1
STRING (EMBL)NUBP1
ZODIACNUBP1
Ontologies - Pathways
QuickGOP53384
Ontology : AmiGOnucleotide binding  protein binding  ATP binding  nucleus  centriole  cytosol  plasma membrane  cilium  cellular iron ion homeostasis  negative regulation of centrosome duplication  cell growth  iron-sulfur cluster assembly  cell projection organization  metal ion binding  iron-sulfur cluster binding  4 iron, 4 sulfur cluster binding  centrosome localization  extracellular exosome  protein localization to cell cortex  
Ontology : EGO-EBInucleotide binding  protein binding  ATP binding  nucleus  centriole  cytosol  plasma membrane  cilium  cellular iron ion homeostasis  negative regulation of centrosome duplication  cell growth  iron-sulfur cluster assembly  cell projection organization  metal ion binding  iron-sulfur cluster binding  4 iron, 4 sulfur cluster binding  centrosome localization  extracellular exosome  protein localization to cell cortex  
NDEx NetworkNUBP1
Atlas of Cancer Signalling NetworkNUBP1
Wikipedia pathwaysNUBP1
Orthology - Evolution
OrthoDB4682
GeneTree (enSembl)ENSG00000103274
Phylogenetic Trees/Animal Genes : TreeFamNUBP1
HOVERGENP53384
HOGENOMP53384
Homologs : HomoloGeneNUBP1
Homology/Alignments : Family Browser (UCSC)NUBP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUBP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUBP1
dbVarNUBP1
ClinVarNUBP1
1000_GenomesNUBP1 
Exome Variant ServerNUBP1
ExAC (Exome Aggregation Consortium)NUBP1 (select the gene name)
Genetic variants : HAPMAP4682
Genomic Variants (DGV)NUBP1 [DGVbeta]
DECIPHERNUBP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUBP1 
Mutations
ICGC Data PortalNUBP1 
TCGA Data PortalNUBP1 
Broad Tumor PortalNUBP1
OASIS PortalNUBP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUBP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUBP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUBP1
DgiDB (Drug Gene Interaction Database)NUBP1
DoCM (Curated mutations)NUBP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUBP1 (select a term)
intoGenNUBP1
Cancer3DNUBP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600280   
Orphanet
MedgenNUBP1
Genetic Testing Registry NUBP1
NextProtP53384 [Medical]
TSGene4682
GENETestsNUBP1
Target ValidationNUBP1
Huge Navigator NUBP1 [HugePedia]
snp3D : Map Gene to Disease4682
BioCentury BCIQNUBP1
ClinGenNUBP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4682
Chemical/Pharm GKB GenePA31823
Clinical trialNUBP1
Miscellaneous
canSAR (ICR)NUBP1 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUBP1
EVEXNUBP1
GoPubMedNUBP1
iHOPNUBP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:33:13 CEST 2017

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