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NUBP2 (nucleotide binding protein 2)

Identity

Alias_namesnucleotide binding protein 2 (E.coli MinD like)
nucleotide binding protein 2 (MinD homolog, E. coli)
Alias_symbol (synonym)CFD1
Other aliasNBP 2
NUBP1
HGNC (Hugo) NUBP2
LocusID (NCBI) 10101
Atlas_Id 71010
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1832924 and ends at 1839192 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GNPTG (16p13.3) / NUBP2 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUBP2   8042
Cards
Entrez_Gene (NCBI)NUBP2  10101  nucleotide binding protein 2
AliasesCFD1; NBP; NUBP1
GeneCards (Weizmann)NUBP2
Ensembl hg19 (Hinxton)ENSG00000095906 [Gene_View]  chr16:1832924-1839192 [Contig_View]  NUBP2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000095906 [Gene_View]  chr16:1832924-1839192 [Contig_View]  NUBP2 [Vega]
ICGC DataPortalENSG00000095906
TCGA cBioPortalNUBP2
AceView (NCBI)NUBP2
Genatlas (Paris)NUBP2
WikiGenes10101
SOURCE (Princeton)NUBP2
Genetics Home Reference (NIH)NUBP2
Genomic and cartography
GoldenPath hg19 (UCSC)NUBP2  -     chr16:1832924-1839192 +  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NUBP2  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblNUBP2 - 16p13.3 [CytoView hg19]  NUBP2 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBINUBP2 [Mapview hg19]  NUBP2 [Mapview hg38]
OMIM610779   
Gene and transcription
Genbank (Entrez)AF118394 AK001023 AK093593 AK124460 AK300696
RefSeq transcript (Entrez)NM_001284501 NM_001284502 NM_012225
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)NUBP2
Cluster EST : UnigeneHs.256549 [ NCBI ]
CGAP (NCI)Hs.256549
Alternative Splicing GalleryENSG00000095906
Gene ExpressionNUBP2 [ NCBI-GEO ]   NUBP2 [ EBI - ARRAY_EXPRESS ]   NUBP2 [ SEEK ]   NUBP2 [ MEM ]
Gene Expression Viewer (FireBrowse)NUBP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10101
GTEX Portal (Tissue expression)NUBP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5Y2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5Y2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5Y2
Splice isoforms : SwissVarQ9Y5Y2
PhosPhoSitePlusQ9Y5Y2
Domaine pattern : Prosite (Expaxy)MRP (PS01215)   
Domains : Interpro (EBI)AAA_dom    Mrp/NBP35_ATP-bd    Mrp_CS    NUBP2/Cfd1_eukaryotes    P-loop_NTPase   
Domain families : Pfam (Sanger)AAA_31 (PF13614)    ParA (PF10609)   
Domain families : Pfam (NCBI)pfam13614    pfam10609   
Conserved Domain (NCBI)NUBP2
DMDM Disease mutations10101
Blocks (Seattle)NUBP2
SuperfamilyQ9Y5Y2
Human Protein AtlasENSG00000095906
Peptide AtlasQ9Y5Y2
HPRD14846
IPIIPI00644674   IPI01014037   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5Y2
IntAct (EBI)Q9Y5Y2
FunCoupENSG00000095906
BioGRIDNUBP2
STRING (EMBL)NUBP2
ZODIACNUBP2
Ontologies - Pathways
QuickGOQ9Y5Y2
Ontology : AmiGOnucleotide binding  protein binding  ATP binding  nucleus  cytoplasm  iron-sulfur cluster assembly  spindle pole centrosome  small molecule metabolic process  metal ion binding  4 iron, 4 sulfur cluster binding  
Ontology : EGO-EBInucleotide binding  protein binding  ATP binding  nucleus  cytoplasm  iron-sulfur cluster assembly  spindle pole centrosome  small molecule metabolic process  metal ion binding  4 iron, 4 sulfur cluster binding  
NDEx NetworkNUBP2
Atlas of Cancer Signalling NetworkNUBP2
Wikipedia pathwaysNUBP2
Orthology - Evolution
OrthoDB10101
GeneTree (enSembl)ENSG00000095906
Phylogenetic Trees/Animal Genes : TreeFamNUBP2
HOVERGENQ9Y5Y2
HOGENOMQ9Y5Y2
Homologs : HomoloGeneNUBP2
Homology/Alignments : Family Browser (UCSC)NUBP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUBP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUBP2
dbVarNUBP2
ClinVarNUBP2
1000_GenomesNUBP2 
Exome Variant ServerNUBP2
ExAC (Exome Aggregation Consortium)NUBP2 (select the gene name)
Genetic variants : HAPMAP10101
Genomic Variants (DGV)NUBP2 [DGVbeta]
DECIPHER (Syndromes)16:1832924-1839192  ENSG00000095906
CONAN: Copy Number AnalysisNUBP2 
Mutations
ICGC Data PortalNUBP2 
TCGA Data PortalNUBP2 
Broad Tumor PortalNUBP2
OASIS PortalNUBP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUBP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUBP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUBP2
DgiDB (Drug Gene Interaction Database)NUBP2
DoCM (Curated mutations)NUBP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUBP2 (select a term)
intoGenNUBP2
Cancer3DNUBP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610779   
Orphanet
MedgenNUBP2
Genetic Testing Registry NUBP2
NextProtQ9Y5Y2 [Medical]
TSGene10101
GENETestsNUBP2
Huge Navigator NUBP2 [HugePedia]
snp3D : Map Gene to Disease10101
BioCentury BCIQNUBP2
ClinGenNUBP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10101
Chemical/Pharm GKB GenePA31824
Clinical trialNUBP2
Miscellaneous
canSAR (ICR)NUBP2 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUBP2
EVEXNUBP2
GoPubMedNUBP2
iHOPNUBP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:35:30 CET 2017

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