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NUBPL (nucleotide binding protein-like)

Identity

Alias_namesC14orf127
chromosome 14 open reading frame 127
nucleotide binding protein-like
Alias_symbol (synonym)FLJ12660
IND1
huInd1
Other alias
HGNC (Hugo) NUBPL
LocusID (NCBI) 80224
Atlas_Id 71011
Location 14q12  [Link to chromosome band 14q12]
Location_base_pair Starts at 32047122 and ends at 32330429 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ARHGAP5 (14q12) / NUBPL (14q12)CCDC93 (2q14.1) / NUBPL (14q12)NUBPL (14q12) / ANKRD46 (8q22.2)
NUBPL (14q12) / DOCK2 (5q35.1)NUBPL (14q12) / SCFD1 (14q12)WWP1 (8q21.3) / NUBPL (14q12)
NUBPL ANKRD46NUBPL SCFD1NUBPL DOCK2
WWP1 NUBPLARHGAP5 NUBPL

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUBPL   20278
Cards
Entrez_Gene (NCBI)NUBPL  80224  nucleotide binding protein-like
AliasesC14orf127; IND1; huInd1
GeneCards (Weizmann)NUBPL
Ensembl hg19 (Hinxton)ENSG00000151413 [Gene_View]  chr14:32047122-32330429 [Contig_View]  NUBPL [Vega]
Ensembl hg38 (Hinxton)ENSG00000151413 [Gene_View]  chr14:32047122-32330429 [Contig_View]  NUBPL [Vega]
ICGC DataPortalENSG00000151413
TCGA cBioPortalNUBPL
AceView (NCBI)NUBPL
Genatlas (Paris)NUBPL
WikiGenes80224
SOURCE (Princeton)NUBPL
Genetics Home Reference (NIH)NUBPL
Genomic and cartography
GoldenPath hg19 (UCSC)NUBPL  -     chr14:32047122-32330429 +  14q12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NUBPL  -     14q12   [Description]    (hg38-Dec_2013)
EnsemblNUBPL - 14q12 [CytoView hg19]  NUBPL - 14q12 [CytoView hg38]
Mapping of homologs : NCBINUBPL [Mapview hg19]  NUBPL [Mapview hg38]
OMIM252010   613621   
Gene and transcription
Genbank (Entrez)AK022722 AK093789 AK295326 AK301447 AK316445
RefSeq transcript (Entrez)NM_001201573 NM_001201574 NM_025152
RefSeq genomic (Entrez)NC_000014 NC_018925 NG_028349 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)NUBPL
Cluster EST : UnigeneHs.288981 [ NCBI ]
CGAP (NCI)Hs.288981
Alternative Splicing GalleryENSG00000151413
Gene ExpressionNUBPL [ NCBI-GEO ]   NUBPL [ EBI - ARRAY_EXPRESS ]   NUBPL [ SEEK ]   NUBPL [ MEM ]
Gene Expression Viewer (FireBrowse)NUBPL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80224
GTEX Portal (Tissue expression)NUBPL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TB37   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TB37  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TB37
Splice isoforms : SwissVarQ8TB37
PhosPhoSitePlusQ8TB37
Domaine pattern : Prosite (Expaxy)MRP (PS01215)   
Domains : Interpro (EBI)AAA_dom    Mrp/NBP35_ATP-bd    Mrp_CS    P-loop_NTPase   
Domain families : Pfam (Sanger)AAA_31 (PF13614)    ParA (PF10609)   
Domain families : Pfam (NCBI)pfam13614    pfam10609   
Conserved Domain (NCBI)NUBPL
DMDM Disease mutations80224
Blocks (Seattle)NUBPL
SuperfamilyQ8TB37
Human Protein AtlasENSG00000151413
Peptide AtlasQ8TB37
HPRD16600
IPIIPI00384517   IPI00385395   IPI01021285   IPI01021436   IPI01020954   IPI01022620   IPI01020681   IPI00980159   IPI00977678   
Protein Interaction databases
DIP (DOE-UCLA)Q8TB37
IntAct (EBI)Q8TB37
FunCoupENSG00000151413
BioGRIDNUBPL
STRING (EMBL)NUBPL
ZODIACNUBPL
Ontologies - Pathways
QuickGOQ8TB37
Ontology : AmiGOATP binding  mitochondrion  mitochondrial respiratory chain complex I assembly  metal ion binding  4 iron, 4 sulfur cluster binding  mitochondrion morphogenesis  
Ontology : EGO-EBIATP binding  mitochondrion  mitochondrial respiratory chain complex I assembly  metal ion binding  4 iron, 4 sulfur cluster binding  mitochondrion morphogenesis  
NDEx NetworkNUBPL
Atlas of Cancer Signalling NetworkNUBPL
Wikipedia pathwaysNUBPL
Orthology - Evolution
OrthoDB80224
GeneTree (enSembl)ENSG00000151413
Phylogenetic Trees/Animal Genes : TreeFamNUBPL
HOVERGENQ8TB37
HOGENOMQ8TB37
Homologs : HomoloGeneNUBPL
Homology/Alignments : Family Browser (UCSC)NUBPL
Gene fusions - Rearrangements
Fusion: TCGANUBPL ANKRD46
Fusion: TCGANUBPL SCFD1
Fusion: TCGANUBPL DOCK2
Fusion: TCGAWWP1 NUBPL
Fusion: TCGAARHGAP5 NUBPL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUBPL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUBPL
dbVarNUBPL
ClinVarNUBPL
1000_GenomesNUBPL 
Exome Variant ServerNUBPL
ExAC (Exome Aggregation Consortium)NUBPL (select the gene name)
Genetic variants : HAPMAP80224
Genomic Variants (DGV)NUBPL [DGVbeta]
DECIPHER (Syndromes)14:32047122-32330429  ENSG00000151413
CONAN: Copy Number AnalysisNUBPL 
Mutations
ICGC Data PortalNUBPL 
TCGA Data PortalNUBPL 
Broad Tumor PortalNUBPL
OASIS PortalNUBPL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUBPL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUBPL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch NUBPL
DgiDB (Drug Gene Interaction Database)NUBPL
DoCM (Curated mutations)NUBPL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUBPL (select a term)
intoGenNUBPL
Cancer3DNUBPL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM252010    613621   
Orphanet369   
MedgenNUBPL
Genetic Testing Registry NUBPL
NextProtQ8TB37 [Medical]
TSGene80224
GENETestsNUBPL
Huge Navigator NUBPL [HugePedia]
snp3D : Map Gene to Disease80224
BioCentury BCIQNUBPL
ClinGenNUBPL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80224
Chemical/Pharm GKB GenePA134907818
Clinical trialNUBPL
Miscellaneous
canSAR (ICR)NUBPL (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUBPL
EVEXNUBPL
GoPubMedNUBPL
iHOPNUBPL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:35:30 CET 2017

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