Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NUCB1 (nucleobindin 1)

Identity

Alias_symbol (synonym)NUC
Calnuc
Other aliasCALNUC
HGNC (Hugo) NUCB1
LocusID (NCBI) 4924
Atlas_Id 47594
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 48900050 and ends at 48923283 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BAX (19q13.33) / NUCB1 (19q13.33)MYH9 (22q12.3) / NUCB1 (19q13.33)NUCB1 (19q13.33) / FAM83E (19q13.33)
NUCB1 (19q13.33) / IL9R (Xq28)NUCB1 (19q13.33) / NUCB1 (19q13.33)NUCB1 (19q13.33) / SCN8A (12q13.13)
NUCB1 19q13.33 / FAM83E 19q13.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUCB1   8043
Cards
Entrez_Gene (NCBI)NUCB1  4924  nucleobindin 1
AliasesCALNUC; NUC
GeneCards (Weizmann)NUCB1
Ensembl hg19 (Hinxton)ENSG00000104805 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104805 [Gene_View]  chr19:48900050-48923283 [Contig_View]  NUCB1 [Vega]
ICGC DataPortalENSG00000104805
TCGA cBioPortalNUCB1
AceView (NCBI)NUCB1
Genatlas (Paris)NUCB1
WikiGenes4924
SOURCE (Princeton)NUCB1
Genetics Home Reference (NIH)NUCB1
Genomic and cartography
GoldenPath hg38 (UCSC)NUCB1  -     chr19:48900050-48923283 +  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUCB1  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblNUCB1 - 19q13.33 [CytoView hg19]  NUCB1 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBINUCB1 [Mapview hg19]  NUCB1 [Mapview hg38]
OMIM601323   
Gene and transcription
Genbank (Entrez)AB527785 AI208532 AK025458 AK097790 AK222805
RefSeq transcript (Entrez)NM_006184
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NUCB1
Cluster EST : UnigeneHs.631602 [ NCBI ]
CGAP (NCI)Hs.631602
Alternative Splicing GalleryENSG00000104805
Gene ExpressionNUCB1 [ NCBI-GEO ]   NUCB1 [ EBI - ARRAY_EXPRESS ]   NUCB1 [ SEEK ]   NUCB1 [ MEM ]
Gene Expression Viewer (FireBrowse)NUCB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4924
GTEX Portal (Tissue expression)NUCB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ02818   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ02818  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ02818
Splice isoforms : SwissVarQ02818
PhosPhoSitePlusQ02818
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)   
Domain families : Pfam (NCBI)pfam13499   
Conserved Domain (NCBI)NUCB1
DMDM Disease mutations4924
Blocks (Seattle)NUCB1
PDB (SRS)1SNL   
PDB (PDBSum)1SNL   
PDB (IMB)1SNL   
PDB (RSDB)1SNL   
Structural Biology KnowledgeBase1SNL   
SCOP (Structural Classification of Proteins)1SNL   
CATH (Classification of proteins structures)1SNL   
SuperfamilyQ02818
Human Protein AtlasENSG00000104805
Peptide AtlasQ02818
HPRD03205
IPIIPI00295542   IPI00980212   IPI00953072   IPI00893068   IPI00892947   IPI00892782   IPI00892657   
Protein Interaction databases
DIP (DOE-UCLA)Q02818
IntAct (EBI)Q02818
FunCoupENSG00000104805
BioGRIDNUCB1
STRING (EMBL)NUCB1
ZODIACNUCB1
Ontologies - Pathways
QuickGOQ02818
Ontology : AmiGOG-protein alpha-subunit binding  DNA binding  calcium ion binding  protein binding  extracellular space  nucleus  early endosome  rough endoplasmic reticulum  endoplasmic reticulum-Golgi intermediate compartment  Golgi-associated vesicle  cis-Golgi network  trans-Golgi network  membrane  Golgi cisterna membrane  extracellular exosome  response to cisplatin  extrinsic component of Golgi membrane  lumenal side of Golgi membrane  regulation of protein targeting  
Ontology : EGO-EBIG-protein alpha-subunit binding  DNA binding  calcium ion binding  protein binding  extracellular space  nucleus  early endosome  rough endoplasmic reticulum  endoplasmic reticulum-Golgi intermediate compartment  Golgi-associated vesicle  cis-Golgi network  trans-Golgi network  membrane  Golgi cisterna membrane  extracellular exosome  response to cisplatin  extrinsic component of Golgi membrane  lumenal side of Golgi membrane  regulation of protein targeting  
NDEx NetworkNUCB1
Atlas of Cancer Signalling NetworkNUCB1
Wikipedia pathwaysNUCB1
Orthology - Evolution
OrthoDB4924
GeneTree (enSembl)ENSG00000104805
Phylogenetic Trees/Animal Genes : TreeFamNUCB1
HOVERGENQ02818
HOGENOMQ02818
Homologs : HomoloGeneNUCB1
Homology/Alignments : Family Browser (UCSC)NUCB1
Gene fusions - Rearrangements
Fusion : MitelmanNUCB1/FAM83E [19q13.33/19q13.33]  
Fusion: TCGANUCB1 19q13.33 FAM83E 19q13.33 OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUCB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUCB1
dbVarNUCB1
ClinVarNUCB1
1000_GenomesNUCB1 
Exome Variant ServerNUCB1
ExAC (Exome Aggregation Consortium)NUCB1 (select the gene name)
Genetic variants : HAPMAP4924
Genomic Variants (DGV)NUCB1 [DGVbeta]
DECIPHERNUCB1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUCB1 
Mutations
ICGC Data PortalNUCB1 
TCGA Data PortalNUCB1 
Broad Tumor PortalNUCB1
OASIS PortalNUCB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUCB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUCB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUCB1
DgiDB (Drug Gene Interaction Database)NUCB1
DoCM (Curated mutations)NUCB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUCB1 (select a term)
intoGenNUCB1
Cancer3DNUCB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601323   
Orphanet
MedgenNUCB1
Genetic Testing Registry NUCB1
NextProtQ02818 [Medical]
TSGene4924
GENETestsNUCB1
Target ValidationNUCB1
Huge Navigator NUCB1 [HugePedia]
snp3D : Map Gene to Disease4924
BioCentury BCIQNUCB1
ClinGenNUCB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4924
Chemical/Pharm GKB GenePA31825
Clinical trialNUCB1
Miscellaneous
canSAR (ICR)NUCB1 (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUCB1
EVEXNUCB1
GoPubMedNUCB1
iHOPNUCB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:47:36 CEST 2017

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