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NUDCD1 (NudC domain containing 1)

Identity

Alias_symbol (synonym)CML66
FLJ14991
Other aliasOVA66
HGNC (Hugo) NUDCD1
LocusID (NCBI) 84955
Atlas_Id 40109
Location 8q23.1  [Link to chromosome band 8q23]
Location_base_pair Starts at 110253148 and ends at 110342162 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NUDCD1 (8q23.1) / NUDCD1 (8q23.1)NUDCD1 (8q23.1) / SYBU (8q23.2)NUDCD1 (8q23.1) / TMEM184C (4q31.23)
NUDCD1 (8q23.1) / VWA8 (13q14.11)TRPC6 (11q22.1) / NUDCD1 (8q23.1)NUDCD1 8q23.1 KIAA0564
NUDCD1 8q23.1 / TMEM184C 4q31.23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Small Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)NUDCD1   24306
Cards
Entrez_Gene (NCBI)NUDCD1  84955  NudC domain containing 1
AliasesCML66; OVA66
GeneCards (Weizmann)NUDCD1
Ensembl hg19 (Hinxton)ENSG00000120526 [Gene_View]  chr8:110253148-110342162 [Contig_View]  NUDCD1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000120526 [Gene_View]  chr8:110253148-110342162 [Contig_View]  NUDCD1 [Vega]
ICGC DataPortalENSG00000120526
TCGA cBioPortalNUDCD1
AceView (NCBI)NUDCD1
Genatlas (Paris)NUDCD1
WikiGenes84955
SOURCE (Princeton)NUDCD1
Genetics Home Reference (NIH)NUDCD1
Genomic and cartography
GoldenPath hg19 (UCSC)NUDCD1  -     chr8:110253148-110342162 -  8q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NUDCD1  -     8q23.1   [Description]    (hg38-Dec_2013)
EnsemblNUDCD1 - 8q23.1 [CytoView hg19]  NUDCD1 - 8q23.1 [CytoView hg38]
Mapping of homologs : NCBINUDCD1 [Mapview hg19]  NUDCD1 [Mapview hg38]
OMIM606109   
Gene and transcription
Genbank (Entrez)AF283301 AF283302 AF521133 AK027897 AK301278
RefSeq transcript (Entrez)NM_001128211 NM_032869
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)NUDCD1
Cluster EST : UnigeneHs.380291 [ NCBI ]
CGAP (NCI)Hs.380291
Alternative Splicing GalleryENSG00000120526
Gene ExpressionNUDCD1 [ NCBI-GEO ]   NUDCD1 [ EBI - ARRAY_EXPRESS ]   NUDCD1 [ SEEK ]   NUDCD1 [ MEM ]
Gene Expression Viewer (FireBrowse)NUDCD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84955
GTEX Portal (Tissue expression)NUDCD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RS6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96RS6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RS6
Splice isoforms : SwissVarQ96RS6
PhosPhoSitePlusQ96RS6
Domaine pattern : Prosite (Expaxy)CS (PS51203)   
Domains : Interpro (EBI)CS_dom    HSP20-like_chaperone   
Domain families : Pfam (Sanger)CS (PF04969)   
Domain families : Pfam (NCBI)pfam04969   
Conserved Domain (NCBI)NUDCD1
DMDM Disease mutations84955
Blocks (Seattle)NUDCD1
SuperfamilyQ96RS6
Human Protein AtlasENSG00000120526
Peptide AtlasQ96RS6
HPRD16200
IPIIPI00797537   IPI00306398   IPI00789225   IPI00974288   IPI00974283   
Protein Interaction databases
DIP (DOE-UCLA)Q96RS6
IntAct (EBI)Q96RS6
FunCoupENSG00000120526
BioGRIDNUDCD1
STRING (EMBL)NUDCD1
ZODIACNUDCD1
Ontologies - Pathways
QuickGOQ96RS6
Ontology : AmiGOimmune system process  protein binding  nucleus  cytoplasm  
Ontology : EGO-EBIimmune system process  protein binding  nucleus  cytoplasm  
NDEx NetworkNUDCD1
Atlas of Cancer Signalling NetworkNUDCD1
Wikipedia pathwaysNUDCD1
Orthology - Evolution
OrthoDB84955
GeneTree (enSembl)ENSG00000120526
Phylogenetic Trees/Animal Genes : TreeFamNUDCD1
HOVERGENQ96RS6
HOGENOMQ96RS6
Homologs : HomoloGeneNUDCD1
Homology/Alignments : Family Browser (UCSC)NUDCD1
Gene fusions - Rearrangements
Fusion : MitelmanNUDCD1/SYBU [8q23.1/8q23.2]  
Fusion : MitelmanNUDCD1/TMEM184C [8q23.1/4q31.23]  [t(4;8)(q31;q23)]  
Fusion : MitelmanNUDCD1/VWA8 [8q23.1/13q14.11]  [t(8;13)(q23;q14)]  
Fusion: TCGANUDCD1 8q23.1 KIAA0564 OV
Fusion: TCGANUDCD1 8q23.1 TMEM184C 4q31.23 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUDCD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUDCD1
dbVarNUDCD1
ClinVarNUDCD1
1000_GenomesNUDCD1 
Exome Variant ServerNUDCD1
ExAC (Exome Aggregation Consortium)NUDCD1 (select the gene name)
Genetic variants : HAPMAP84955
Genomic Variants (DGV)NUDCD1 [DGVbeta]
DECIPHER (Syndromes)8:110253148-110342162  ENSG00000120526
CONAN: Copy Number AnalysisNUDCD1 
Mutations
ICGC Data PortalNUDCD1 
TCGA Data PortalNUDCD1 
Broad Tumor PortalNUDCD1
OASIS PortalNUDCD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUDCD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUDCD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUDCD1
DgiDB (Drug Gene Interaction Database)NUDCD1
DoCM (Curated mutations)NUDCD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUDCD1 (select a term)
intoGenNUDCD1
Cancer3DNUDCD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606109   
Orphanet
MedgenNUDCD1
Genetic Testing Registry NUDCD1
NextProtQ96RS6 [Medical]
TSGene84955
GENETestsNUDCD1
Huge Navigator NUDCD1 [HugePedia]
snp3D : Map Gene to Disease84955
BioCentury BCIQNUDCD1
ClinGenNUDCD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84955
Chemical/Pharm GKB GenePA134985670
Clinical trialNUDCD1
Miscellaneous
canSAR (ICR)NUDCD1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUDCD1
EVEXNUDCD1
GoPubMedNUDCD1
iHOPNUDCD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:12:51 CEST 2017

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