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NUDCD1 (NudC domain containing 1)

Identity

Alias (NCBI)CML66
OVA66
HGNC (Hugo) NUDCD1
HGNC Alias symbCML66
FLJ14991
LocusID (NCBI) 84955
Atlas_Id 40109
Location 8q23.1  [Link to chromosome band 8q23]
Location_base_pair Starts at 109240919 and ends at 109334087 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NUDCD1 (8q23.1) / NUDCD1 (8q23.1)NUDCD1 (8q23.1) / SYBU (8q23.2)NUDCD1 (8q23.1) / TMEM184C (4q31.23)
NUDCD1 (8q23.1) / VWA8 (13q14.11)TRPC6 (11q22.1) / NUDCD1 (8q23.1)NUDCD1 8q23.1 KIAA0564
NUDCD1 8q23.1 / TMEM184C 4q31.23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(8;11)(q23;q22) TRPC6/NUDCD1


External links

Nomenclature
HGNC (Hugo)NUDCD1   24306
Cards
Entrez_Gene (NCBI)NUDCD1    NudC domain containing 1
AliasesCML66; OVA66
GeneCards (Weizmann)NUDCD1
Ensembl hg19 (Hinxton)ENSG00000120526 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120526 [Gene_View]  ENSG00000120526 [Sequence]  chr8:109240919-109334087 [Contig_View]  NUDCD1 [Vega]
ICGC DataPortalENSG00000120526
TCGA cBioPortalNUDCD1
AceView (NCBI)NUDCD1
Genatlas (Paris)NUDCD1
SOURCE (Princeton)NUDCD1
Genetics Home Reference (NIH)NUDCD1
Genomic and cartography
GoldenPath hg38 (UCSC)NUDCD1  -     chr8:109240919-109334087 -  8q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUDCD1  -     8q23.1   [Description]    (hg19-Feb_2009)
GoldenPathNUDCD1 - 8q23.1 [CytoView hg19]  NUDCD1 - 8q23.1 [CytoView hg38]
ImmunoBaseENSG00000120526
genome Data Viewer NCBINUDCD1 [Mapview hg19]  
OMIM606109   
Gene and transcription
Genbank (Entrez)AF283301 AF283302 AF521133 AK027897 AK301278
RefSeq transcript (Entrez)NM_001128211 NM_032869
Consensus coding sequences : CCDS (NCBI)NUDCD1
Alternative Splicing GalleryENSG00000120526
Gene ExpressionNUDCD1 [ NCBI-GEO ]   NUDCD1 [ EBI - ARRAY_EXPRESS ]   NUDCD1 [ SEEK ]   NUDCD1 [ MEM ]
Gene Expression Viewer (FireBrowse)NUDCD1 [ Firebrowse - Broad ]
GenevisibleExpression of NUDCD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84955
GTEX Portal (Tissue expression)NUDCD1
Human Protein AtlasENSG00000120526-NUDCD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RS6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96RS6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RS6
PhosPhoSitePlusQ96RS6
Domaine pattern : Prosite (Expaxy)CS (PS51203)   
Domains : Interpro (EBI)CS_dom    HSP20-like_chaperone    NUDCD1   
Domain families : Pfam (Sanger)CS (PF04969)   
Domain families : Pfam (NCBI)pfam04969   
Conserved Domain (NCBI)NUDCD1
SuperfamilyQ96RS6
AlphaFold pdb e-kbQ96RS6   
Human Protein Atlas [tissue]ENSG00000120526-NUDCD1 [tissue]
HPRD16200
Protein Interaction databases
DIP (DOE-UCLA)Q96RS6
IntAct (EBI)Q96RS6
BioGRIDNUDCD1
STRING (EMBL)NUDCD1
ZODIACNUDCD1
Ontologies - Pathways
QuickGOQ96RS6
Ontology : AmiGOimmune system process  protein binding  nucleoplasm  cytosol  
Ontology : EGO-EBIimmune system process  protein binding  nucleoplasm  cytosol  
NDEx NetworkNUDCD1
Atlas of Cancer Signalling NetworkNUDCD1
Wikipedia pathwaysNUDCD1
Orthology - Evolution
OrthoDB84955
GeneTree (enSembl)ENSG00000120526
Phylogenetic Trees/Animal Genes : TreeFamNUDCD1
Homologs : HomoloGeneNUDCD1
Homology/Alignments : Family Browser (UCSC)NUDCD1
Gene fusions - Rearrangements
Fusion : MitelmanNUDCD1/SYBU [8q23.1/8q23.2]  
Fusion : MitelmanNUDCD1/TMEM184C [8q23.1/4q31.23]  
Fusion : MitelmanNUDCD1/VWA8 [8q23.1/13q14.11]  
Fusion PortalNUDCD1 8q23.1 KIAA0564 OV
Fusion PortalNUDCD1 8q23.1 TMEM184C 4q31.23 BRCA
Fusion : QuiverNUDCD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUDCD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUDCD1
dbVarNUDCD1
ClinVarNUDCD1
MonarchNUDCD1
1000_GenomesNUDCD1 
Exome Variant ServerNUDCD1
GNOMAD BrowserENSG00000120526
Varsome BrowserNUDCD1
Genomic Variants (DGV)NUDCD1 [DGVbeta]
DECIPHERNUDCD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUDCD1 
Mutations
ICGC Data PortalNUDCD1 
TCGA Data PortalNUDCD1 
Broad Tumor PortalNUDCD1
OASIS PortalNUDCD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUDCD1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNUDCD1
Mutations and Diseases : HGMDNUDCD1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutasearch NUDCD1
DgiDB (Drug Gene Interaction Database)NUDCD1
DoCM (Curated mutations)NUDCD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUDCD1 (select a term)
Cancer3DNUDCD1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606109   
Orphanet
DisGeNETNUDCD1
MedgenNUDCD1
Genetic Testing Registry NUDCD1
NextProtQ96RS6 [Medical]
GENETestsNUDCD1
Target ValidationNUDCD1
Huge Navigator NUDCD1 [HugePedia]
ClinGenNUDCD1
Clinical trials, drugs, therapy
MyCancerGenomeNUDCD1
Protein Interactions : CTDNUDCD1
Pharm GKB GenePA134985670
PharosQ96RS6
Clinical trialNUDCD1
Miscellaneous
canSAR (ICR)NUDCD1
HarmonizomeNUDCD1
DataMed IndexNUDCD1
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNUDCD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Sep 15 22:28:42 CEST 2021

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