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NUDCD2 (NudC domain containing 2)

Identity

Alias_symbol (synonym)DKFZp686E10109
NudCL2
Other alias
HGNC (Hugo) NUDCD2
LocusID (NCBI) 134492
Atlas_Id 71013
Location 5q34  [Link to chromosome band 5q34]
Location_base_pair Starts at 163446528 and ends at 163460154 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CREB5 (7p15.1) / NUDCD2 (5q34)NUDCD2 (5q34) / BACH2 (6q15)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUDCD2   30535
Cards
Entrez_Gene (NCBI)NUDCD2  134492  NudC domain containing 2
AliasesNudCL2
GeneCards (Weizmann)NUDCD2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:163446528-163460154 [Contig_View]  NUDCD2 [Vega]
TCGA cBioPortalNUDCD2
AceView (NCBI)NUDCD2
Genatlas (Paris)NUDCD2
WikiGenes134492
SOURCE (Princeton)NUDCD2
Genetics Home Reference (NIH)NUDCD2
Genomic and cartography
GoldenPath hg38 (UCSC)NUDCD2  -     chr5:163446528-163460154 -  5q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUDCD2  -     5q34   [Description]    (hg19-Feb_2009)
EnsemblNUDCD2 - 5q34 [CytoView hg19]  NUDCD2 - 5q34 [CytoView hg38]
Mapping of homologs : NCBINUDCD2 [Mapview hg19]  NUDCD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK311957 AM392736 AM393438 BC017934 BX538290
RefSeq transcript (Entrez)NM_001329991 NM_145266
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NUDCD2
Cluster EST : UnigeneHs.140443 [ NCBI ]
CGAP (NCI)Hs.140443
Gene ExpressionNUDCD2 [ NCBI-GEO ]   NUDCD2 [ EBI - ARRAY_EXPRESS ]   NUDCD2 [ SEEK ]   NUDCD2 [ MEM ]
Gene Expression Viewer (FireBrowse)NUDCD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)134492
GTEX Portal (Tissue expression)NUDCD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVJ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WVJ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVJ2
Splice isoforms : SwissVarQ8WVJ2
PhosPhoSitePlusQ8WVJ2
Domaine pattern : Prosite (Expaxy)CS (PS51203)   
Domains : Interpro (EBI)CS_dom    HSP20-like_chaperone   
Domain families : Pfam (Sanger)CS (PF04969)   
Domain families : Pfam (NCBI)pfam04969   
Conserved Domain (NCBI)NUDCD2
DMDM Disease mutations134492
Blocks (Seattle)NUDCD2
SuperfamilyQ8WVJ2
Peptide AtlasQ8WVJ2
HPRD14058
IPIIPI00103142   IPI00973891   
Protein Interaction databases
DIP (DOE-UCLA)Q8WVJ2
IntAct (EBI)Q8WVJ2
BioGRIDNUDCD2
STRING (EMBL)NUDCD2
ZODIACNUDCD2
Ontologies - Pathways
QuickGOQ8WVJ2
Ontology : AmiGOcondensed chromosome kinetochore  spindle pole  protein binding  intracellular  cytoplasm  microtubule organizing center  cytosol  protein folding  microtubule cytoskeleton  developmental process  unfolded protein binding  extracellular exosome  
Ontology : EGO-EBIcondensed chromosome kinetochore  spindle pole  protein binding  intracellular  cytoplasm  microtubule organizing center  cytosol  protein folding  microtubule cytoskeleton  developmental process  unfolded protein binding  extracellular exosome  
NDEx NetworkNUDCD2
Atlas of Cancer Signalling NetworkNUDCD2
Wikipedia pathwaysNUDCD2
Orthology - Evolution
OrthoDB134492
Phylogenetic Trees/Animal Genes : TreeFamNUDCD2
HOVERGENQ8WVJ2
HOGENOMQ8WVJ2
Homologs : HomoloGeneNUDCD2
Homology/Alignments : Family Browser (UCSC)NUDCD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUDCD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUDCD2
dbVarNUDCD2
ClinVarNUDCD2
1000_GenomesNUDCD2 
Exome Variant ServerNUDCD2
ExAC (Exome Aggregation Consortium)NUDCD2 (select the gene name)
Genetic variants : HAPMAP134492
Genomic Variants (DGV)NUDCD2 [DGVbeta]
DECIPHERNUDCD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUDCD2 
Mutations
ICGC Data PortalNUDCD2 
TCGA Data PortalNUDCD2 
Broad Tumor PortalNUDCD2
OASIS PortalNUDCD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUDCD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUDCD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUDCD2
DgiDB (Drug Gene Interaction Database)NUDCD2
DoCM (Curated mutations)NUDCD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUDCD2 (select a term)
intoGenNUDCD2
Cancer3DNUDCD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNUDCD2
Genetic Testing Registry NUDCD2
NextProtQ8WVJ2 [Medical]
TSGene134492
GENETestsNUDCD2
Target ValidationNUDCD2
Huge Navigator NUDCD2 [HugePedia]
snp3D : Map Gene to Disease134492
BioCentury BCIQNUDCD2
ClinGenNUDCD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD134492
Chemical/Pharm GKB GenePA134991349
Clinical trialNUDCD2
Miscellaneous
canSAR (ICR)NUDCD2 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUDCD2
EVEXNUDCD2
GoPubMedNUDCD2
iHOPNUDCD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:25 CEST 2017

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