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NUDCD3 (NudC domain containing 3)

Identity

Alias_symbol (synonym)KIAA1068
NudCL
Other alias
HGNC (Hugo) NUDCD3
LocusID (NCBI) 23386
Atlas_Id 71014
Location 7p13  [Link to chromosome band 7p13]
Location_base_pair Starts at 44382366 and ends at 44490786 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DDX43 (6q13) / NUDCD3 (7p13)NUDCD3 (7p13) / DDIT4 (10q22.1)NUDCD3 (7p13) / LMCD1 (3p26.1)
NUDCD3 (7p13) / LRRC4C (11p12)NUDCD3 (7p13) / NUDCD3 (7p13)NUDCD3 (7p13) / PTCH1 (9q22.32)
PSG9 (19q13.31) / NUDCD3 (7p13)SLC12A7 (5p15.33) / NUDCD3 (7p13)ZNF655 (7q22.1) / NUDCD3 (7p13)
ZYX (7q34) / NUDCD3 (7p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUDCD3   22208
Cards
Entrez_Gene (NCBI)NUDCD3  23386  NudC domain containing 3
AliasesNudCL
GeneCards (Weizmann)NUDCD3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:44382366-44490786 [Contig_View]  NUDCD3 [Vega]
TCGA cBioPortalNUDCD3
AceView (NCBI)NUDCD3
Genatlas (Paris)NUDCD3
WikiGenes23386
SOURCE (Princeton)NUDCD3
Genetics Home Reference (NIH)NUDCD3
Genomic and cartography
GoldenPath hg38 (UCSC)NUDCD3  -     chr7:44382366-44490786 -  7p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUDCD3  -     7p13   [Description]    (hg19-Feb_2009)
EnsemblNUDCD3 - 7p13 [CytoView hg19]  NUDCD3 - 7p13 [CytoView hg38]
Mapping of homologs : NCBINUDCD3 [Mapview hg19]  NUDCD3 [Mapview hg38]
OMIM610296   
Gene and transcription
Genbank (Entrez)AB028991 AK024226 AK025555 AK026126 AK124729
RefSeq transcript (Entrez)NM_015332
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NUDCD3
Cluster EST : UnigeneHs.488171 [ NCBI ]
CGAP (NCI)Hs.488171
Gene ExpressionNUDCD3 [ NCBI-GEO ]   NUDCD3 [ EBI - ARRAY_EXPRESS ]   NUDCD3 [ SEEK ]   NUDCD3 [ MEM ]
Gene Expression Viewer (FireBrowse)NUDCD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23386
GTEX Portal (Tissue expression)NUDCD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVD9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVD9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVD9
Splice isoforms : SwissVarQ8IVD9
PhosPhoSitePlusQ8IVD9
Domaine pattern : Prosite (Expaxy)CS (PS51203)   
Domains : Interpro (EBI)CS_dom    HSP20-like_chaperone    NudC_N_dom    NUDCD3   
Domain families : Pfam (Sanger)CS (PF04969)    Nudc_N (PF14050)   
Domain families : Pfam (NCBI)pfam04969    pfam14050   
Conserved Domain (NCBI)NUDCD3
DMDM Disease mutations23386
Blocks (Seattle)NUDCD3
PDB (SRS)1WGV   
PDB (PDBSum)1WGV   
PDB (IMB)1WGV   
PDB (RSDB)1WGV   
Structural Biology KnowledgeBase1WGV   
SCOP (Structural Classification of Proteins)1WGV   
CATH (Classification of proteins structures)1WGV   
SuperfamilyQ8IVD9
Peptide AtlasQ8IVD9
HPRD13831
IPIIPI00238209   IPI00927164   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVD9
IntAct (EBI)Q8IVD9
BioGRIDNUDCD3
STRING (EMBL)NUDCD3
ZODIACNUDCD3
Ontologies - Pathways
QuickGOQ8IVD9
Ontology : AmiGOprotein binding  cytoplasm  cytoplasmic dynein complex  protein folding  developmental process  unfolded protein binding  cilium assembly  protein localization to pericentriolar material  
Ontology : EGO-EBIprotein binding  cytoplasm  cytoplasmic dynein complex  protein folding  developmental process  unfolded protein binding  cilium assembly  protein localization to pericentriolar material  
NDEx NetworkNUDCD3
Atlas of Cancer Signalling NetworkNUDCD3
Wikipedia pathwaysNUDCD3
Orthology - Evolution
OrthoDB23386
Phylogenetic Trees/Animal Genes : TreeFamNUDCD3
HOVERGENQ8IVD9
HOGENOMQ8IVD9
Homologs : HomoloGeneNUDCD3
Homology/Alignments : Family Browser (UCSC)NUDCD3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUDCD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUDCD3
dbVarNUDCD3
ClinVarNUDCD3
1000_GenomesNUDCD3 
Exome Variant ServerNUDCD3
ExAC (Exome Aggregation Consortium)NUDCD3 (select the gene name)
Genetic variants : HAPMAP23386
Genomic Variants (DGV)NUDCD3 [DGVbeta]
DECIPHERNUDCD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUDCD3 
Mutations
ICGC Data PortalNUDCD3 
TCGA Data PortalNUDCD3 
Broad Tumor PortalNUDCD3
OASIS PortalNUDCD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUDCD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUDCD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUDCD3
DgiDB (Drug Gene Interaction Database)NUDCD3
DoCM (Curated mutations)NUDCD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUDCD3 (select a term)
intoGenNUDCD3
Cancer3DNUDCD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610296   
Orphanet
MedgenNUDCD3
Genetic Testing Registry NUDCD3
NextProtQ8IVD9 [Medical]
TSGene23386
GENETestsNUDCD3
Target ValidationNUDCD3
Huge Navigator NUDCD3 [HugePedia]
snp3D : Map Gene to Disease23386
BioCentury BCIQNUDCD3
ClinGenNUDCD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23386
Chemical/Pharm GKB GenePA134989375
Clinical trialNUDCD3
Miscellaneous
canSAR (ICR)NUDCD3 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUDCD3
EVEXNUDCD3
GoPubMedNUDCD3
iHOPNUDCD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:33:14 CEST 2017

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