Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NUDT10 (nudix hydrolase 10)

Identity

Alias_namesnudix (nucleoside diphosphate linked moiety X)-type motif 10
Alias_symbol (synonym)DIPP3a
hDIPP3alpha
Other aliasAPS2
DIPP3-alpha
HGNC (Hugo) NUDT10
LocusID (NCBI) 170685
Atlas_Id 71015
Location Xp11.22  [Link to chromosome band Xp11]
Location_base_pair Starts at 51332809 and ends at 51337525 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NUDT10 (Xp11.22) / TTC37 (5q15)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUDT10   17621
Cards
Entrez_Gene (NCBI)NUDT10  170685  nudix hydrolase 10
AliasesAPS2; DIPP3-alpha; DIPP3a
GeneCards (Weizmann)NUDT10
Ensembl hg19 (Hinxton)ENSG00000122824 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122824 [Gene_View]  chrX:51332809-51337525 [Contig_View]  NUDT10 [Vega]
ICGC DataPortalENSG00000122824
TCGA cBioPortalNUDT10
AceView (NCBI)NUDT10
Genatlas (Paris)NUDT10
WikiGenes170685
SOURCE (Princeton)NUDT10
Genetics Home Reference (NIH)NUDT10
Genomic and cartography
GoldenPath hg38 (UCSC)NUDT10  -     chrX:51332809-51337525 +  Xp11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUDT10  -     Xp11.22   [Description]    (hg19-Feb_2009)
EnsemblNUDT10 - Xp11.22 [CytoView hg19]  NUDT10 - Xp11.22 [CytoView hg38]
Mapping of homologs : NCBINUDT10 [Mapview hg19]  NUDT10 [Mapview hg38]
OMIM300527   
Gene and transcription
Genbank (Entrez)AF469196 AK291952 BC049383 BC050700 BX449265
RefSeq transcript (Entrez)NM_001304963 NM_153183
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NUDT10
Cluster EST : UnigeneHs.375178 [ NCBI ]
CGAP (NCI)Hs.375178
Alternative Splicing GalleryENSG00000122824
Gene ExpressionNUDT10 [ NCBI-GEO ]   NUDT10 [ EBI - ARRAY_EXPRESS ]   NUDT10 [ SEEK ]   NUDT10 [ MEM ]
Gene Expression Viewer (FireBrowse)NUDT10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)170685
GTEX Portal (Tissue expression)NUDT10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NFP7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NFP7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NFP7
Splice isoforms : SwissVarQ8NFP7
PhosPhoSitePlusQ8NFP7
Domaine pattern : Prosite (Expaxy)NUDIX (PS51462)    NUDIX_BOX (PS00893)   
Domains : Interpro (EBI)NUDIX_hydrolase_CS    NUDIX_hydrolase_dom    NUDIX_hydrolase_dom-like   
Domain families : Pfam (Sanger)NUDIX (PF00293)   
Domain families : Pfam (NCBI)pfam00293   
Conserved Domain (NCBI)NUDT10
DMDM Disease mutations170685
Blocks (Seattle)NUDT10
PDB (SRS)3MCF   
PDB (PDBSum)3MCF   
PDB (IMB)3MCF   
PDB (RSDB)3MCF   
Structural Biology KnowledgeBase3MCF   
SCOP (Structural Classification of Proteins)3MCF   
CATH (Classification of proteins structures)3MCF   
SuperfamilyQ8NFP7
Human Protein AtlasENSG00000122824
Peptide AtlasQ8NFP7
HPRD17651
IPIIPI00549204   
Protein Interaction databases
DIP (DOE-UCLA)Q8NFP7
IntAct (EBI)Q8NFP7
FunCoupENSG00000122824
BioGRIDNUDT10
STRING (EMBL)NUDT10
ZODIACNUDT10
Ontologies - Pathways
QuickGOQ8NFP7
Ontology : AmiGOendopolyphosphatase activity  protein binding  nucleus  cytoplasm  cytosol  cytosol  diphosphoinositol-polyphosphate diphosphatase activity  diphosphoinositol-polyphosphate diphosphatase activity  bis(5'-adenosyl)-hexaphosphatase activity  bis(5'-adenosyl)-pentaphosphatase activity  inositol phosphate metabolic process  metal ion binding  m7G(5')pppN diphosphatase activity  inositol diphosphate tetrakisphosphate diphosphatase activity  inositol bisdiphosphate tetrakisphosphate diphosphatase activity  inositol diphosphate pentakisphosphate diphosphatase activity  inositol-1-diphosphate-2,3,4,5,6-pentakisphosphate diphosphatase activity  inositol-3-diphosphate-1,2,4,5,6-pentakisphosphate diphosphatase activity  inositol-5-diphosphate-1,2,3,4,6-pentakisphosphate diphosphatase activity  inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 1-diphosphatase activity  inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity  inositol-3,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity  diphosphoinositol polyphosphate metabolic process  diadenosine pentaphosphate catabolic process  diadenosine hexaphosphate catabolic process  adenosine 5'-(hexahydrogen pentaphosphate) catabolic process  
Ontology : EGO-EBIendopolyphosphatase activity  protein binding  nucleus  cytoplasm  cytosol  cytosol  diphosphoinositol-polyphosphate diphosphatase activity  diphosphoinositol-polyphosphate diphosphatase activity  bis(5'-adenosyl)-hexaphosphatase activity  bis(5'-adenosyl)-pentaphosphatase activity  inositol phosphate metabolic process  metal ion binding  m7G(5')pppN diphosphatase activity  inositol diphosphate tetrakisphosphate diphosphatase activity  inositol bisdiphosphate tetrakisphosphate diphosphatase activity  inositol diphosphate pentakisphosphate diphosphatase activity  inositol-1-diphosphate-2,3,4,5,6-pentakisphosphate diphosphatase activity  inositol-3-diphosphate-1,2,4,5,6-pentakisphosphate diphosphatase activity  inositol-5-diphosphate-1,2,3,4,6-pentakisphosphate diphosphatase activity  inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 1-diphosphatase activity  inositol-1,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity  inositol-3,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity  diphosphoinositol polyphosphate metabolic process  diadenosine pentaphosphate catabolic process  diadenosine hexaphosphate catabolic process  adenosine 5'-(hexahydrogen pentaphosphate) catabolic process  
NDEx NetworkNUDT10
Atlas of Cancer Signalling NetworkNUDT10
Wikipedia pathwaysNUDT10
Orthology - Evolution
OrthoDB170685
GeneTree (enSembl)ENSG00000122824
Phylogenetic Trees/Animal Genes : TreeFamNUDT10
HOVERGENQ8NFP7
HOGENOMQ8NFP7
Homologs : HomoloGeneNUDT10
Homology/Alignments : Family Browser (UCSC)NUDT10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUDT10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUDT10
dbVarNUDT10
ClinVarNUDT10
1000_GenomesNUDT10 
Exome Variant ServerNUDT10
ExAC (Exome Aggregation Consortium)NUDT10 (select the gene name)
Genetic variants : HAPMAP170685
Genomic Variants (DGV)NUDT10 [DGVbeta]
DECIPHERNUDT10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUDT10 
Mutations
ICGC Data PortalNUDT10 
TCGA Data PortalNUDT10 
Broad Tumor PortalNUDT10
OASIS PortalNUDT10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUDT10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUDT10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUDT10
DgiDB (Drug Gene Interaction Database)NUDT10
DoCM (Curated mutations)NUDT10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUDT10 (select a term)
intoGenNUDT10
Cancer3DNUDT10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300527   
Orphanet
MedgenNUDT10
Genetic Testing Registry NUDT10
NextProtQ8NFP7 [Medical]
TSGene170685
GENETestsNUDT10
Target ValidationNUDT10
Huge Navigator NUDT10 [HugePedia]
snp3D : Map Gene to Disease170685
BioCentury BCIQNUDT10
ClinGenNUDT10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD170685
Chemical/Pharm GKB GenePA31831
Clinical trialNUDT10
Miscellaneous
canSAR (ICR)NUDT10 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUDT10
EVEXNUDT10
GoPubMedNUDT10
iHOPNUDT10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:32:25 CEST 2017

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