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NUDT12 (nudix (nucleoside diphosphate linked moiety X)-type motif 12)

Identity

Alias_namesnudix (nucleoside diphosphate linked moiety X)-type motif 12
Alias_symbol (synonym)DKFZP761I172
Other alias-
HGNC (Hugo) NUDT12
LocusID (NCBI) 83594
Atlas_Id 71016
Location 5q21.2  [Link to chromosome band 5q21]
Location_base_pair Starts at 102884556 and ends at 102898502 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUDT12   18826
Cards
Entrez_Gene (NCBI)NUDT12  83594  nudix (nucleoside diphosphate linked moiety X)-type motif 12
Aliases
GeneCards (Weizmann)NUDT12
Ensembl hg19 (Hinxton)ENSG00000112874 [Gene_View]  chr5:102884556-102898502 [Contig_View]  NUDT12 [Vega]
Ensembl hg38 (Hinxton)ENSG00000112874 [Gene_View]  chr5:102884556-102898502 [Contig_View]  NUDT12 [Vega]
ICGC DataPortalENSG00000112874
TCGA cBioPortalNUDT12
AceView (NCBI)NUDT12
Genatlas (Paris)NUDT12
WikiGenes83594
SOURCE (Princeton)NUDT12
Genetics Home Reference (NIH)NUDT12
Genomic and cartography
GoldenPath hg19 (UCSC)NUDT12  -     chr5:102884556-102898502 -  5q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NUDT12  -     5q21.2   [Description]    (hg38-Dec_2013)
EnsemblNUDT12 - 5q21.2 [CytoView hg19]  NUDT12 - 5q21.2 [CytoView hg38]
Mapping of homologs : NCBINUDT12 [Mapview hg19]  NUDT12 [Mapview hg38]
OMIM609232   
Gene and transcription
Genbank (Entrez)AK098066 AK304010 AK309942 AL136592 AM392531
RefSeq transcript (Entrez)NM_001300741 NM_031438
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929323
Consensus coding sequences : CCDS (NCBI)NUDT12
Cluster EST : UnigeneHs.434289 [ NCBI ]
CGAP (NCI)Hs.434289
Alternative Splicing GalleryENSG00000112874
Gene ExpressionNUDT12 [ NCBI-GEO ]   NUDT12 [ EBI - ARRAY_EXPRESS ]   NUDT12 [ SEEK ]   NUDT12 [ MEM ]
Gene Expression Viewer (FireBrowse)NUDT12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83594
GTEX Portal (Tissue expression)NUDT12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQG2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQG2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQG2
Splice isoforms : SwissVarQ9BQG2
Catalytic activity : Enzyme3.6.1.22 [ Enzyme-Expasy ]   3.6.1.223.6.1.22 [ IntEnz-EBI ]   3.6.1.22 [ BRENDA ]   3.6.1.22 [ KEGG ]   
PhosPhoSitePlusQ9BQG2
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    NUDIX (PS51462)    NUDIX_BOX (PS00893)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    NADH_PPase-like_N    NUDIX_hydrolase_CS    NUDIX_hydrolase_dom    NUDIX_hydrolase_dom-like    Znr_NADH_PPase   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    NUDIX (PF00293)    NUDIX-like (PF09296)    zf-NADH-PPase (PF09297)   
Domain families : Pfam (NCBI)pfam12796    pfam00293    pfam09296    pfam09297   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)NUDT12
DMDM Disease mutations83594
Blocks (Seattle)NUDT12
SuperfamilyQ9BQG2
Human Protein AtlasENSG00000112874
Peptide AtlasQ9BQG2
HPRD10123
IPIIPI00027778   IPI00965211   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQG2
IntAct (EBI)Q9BQG2
FunCoupENSG00000112874
BioGRIDNUDT12
STRING (EMBL)NUDT12
ZODIACNUDT12
Ontologies - Pathways
QuickGOQ9BQG2
Ontology : AmiGONAD+ diphosphatase activity  protein binding  nucleus  peroxisome  NADP catabolic process  NAD catabolic process  NADH pyrophosphatase activity  metal ion binding  
Ontology : EGO-EBINAD+ diphosphatase activity  protein binding  nucleus  peroxisome  NADP catabolic process  NAD catabolic process  NADH pyrophosphatase activity  metal ion binding  
Pathways : KEGGNicotinate and nicotinamide metabolism    Peroxisome   
NDEx NetworkNUDT12
Atlas of Cancer Signalling NetworkNUDT12
Wikipedia pathwaysNUDT12
Orthology - Evolution
OrthoDB83594
GeneTree (enSembl)ENSG00000112874
Phylogenetic Trees/Animal Genes : TreeFamNUDT12
HOVERGENQ9BQG2
HOGENOMQ9BQG2
Homologs : HomoloGeneNUDT12
Homology/Alignments : Family Browser (UCSC)NUDT12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUDT12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUDT12
dbVarNUDT12
ClinVarNUDT12
1000_GenomesNUDT12 
Exome Variant ServerNUDT12
ExAC (Exome Aggregation Consortium)NUDT12 (select the gene name)
Genetic variants : HAPMAP83594
Genomic Variants (DGV)NUDT12 [DGVbeta]
DECIPHER (Syndromes)5:102884556-102898502  ENSG00000112874
CONAN: Copy Number AnalysisNUDT12 
Mutations
ICGC Data PortalNUDT12 
TCGA Data PortalNUDT12 
Broad Tumor PortalNUDT12
OASIS PortalNUDT12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUDT12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUDT12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUDT12
DgiDB (Drug Gene Interaction Database)NUDT12
DoCM (Curated mutations)NUDT12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUDT12 (select a term)
intoGenNUDT12
Cancer3DNUDT12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609232   
Orphanet
MedgenNUDT12
Genetic Testing Registry NUDT12
NextProtQ9BQG2 [Medical]
TSGene83594
GENETestsNUDT12
Huge Navigator NUDT12 [HugePedia]
snp3D : Map Gene to Disease83594
BioCentury BCIQNUDT12
ClinGenNUDT12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83594
Chemical/Pharm GKB GenePA38699
Clinical trialNUDT12
Miscellaneous
canSAR (ICR)NUDT12 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUDT12
EVEXNUDT12
GoPubMedNUDT12
iHOPNUDT12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:35:31 CET 2017

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