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NUDT13 (nudix hydrolase 13)

Identity

Alias_namesnudix (nucleoside diphosphate linked moiety X)-type motif 13
Alias_symbol (synonym)DKFZp586P2219
Other alias-
HGNC (Hugo) NUDT13
LocusID (NCBI) 25961
Atlas_Id 71017
Location 10q22.2  [Link to chromosome band 10q22]
Location_base_pair Starts at 73110375 and ends at 73131828 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NUDT13 (10q22.1) / NUDT13 (10q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUDT13   18827
Cards
Entrez_Gene (NCBI)NUDT13  25961  nudix hydrolase 13
Aliases
GeneCards (Weizmann)NUDT13
Ensembl hg19 (Hinxton)ENSG00000166321 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166321 [Gene_View]  chr10:73110375-73131828 [Contig_View]  NUDT13 [Vega]
ICGC DataPortalENSG00000166321
TCGA cBioPortalNUDT13
AceView (NCBI)NUDT13
Genatlas (Paris)NUDT13
WikiGenes25961
SOURCE (Princeton)NUDT13
Genetics Home Reference (NIH)NUDT13
Genomic and cartography
GoldenPath hg38 (UCSC)NUDT13  -     chr10:73110375-73131828 +  10q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUDT13  -     10q22.2   [Description]    (hg19-Feb_2009)
EnsemblNUDT13 - 10q22.2 [CytoView hg19]  NUDT13 - 10q22.2 [CytoView hg38]
Mapping of homologs : NCBINUDT13 [Mapview hg19]  NUDT13 [Mapview hg38]
OMIM609233   
Gene and transcription
Genbank (Entrez)AK300980 AK303235 AK309755 AK316538 AL050114
RefSeq transcript (Entrez)NM_001283014 NM_001283015 NM_001283016 NM_001283017 NM_001283019 NM_015901
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NUDT13
Cluster EST : UnigeneHs.533657 [ NCBI ]
CGAP (NCI)Hs.533657
Alternative Splicing GalleryENSG00000166321
Gene ExpressionNUDT13 [ NCBI-GEO ]   NUDT13 [ EBI - ARRAY_EXPRESS ]   NUDT13 [ SEEK ]   NUDT13 [ MEM ]
Gene Expression Viewer (FireBrowse)NUDT13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25961
GTEX Portal (Tissue expression)NUDT13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86X67   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86X67  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86X67
Splice isoforms : SwissVarQ86X67
Catalytic activity : Enzyme3.-.-.- [ Enzyme-Expasy ]   3.-.-.-3.-.-.- [ IntEnz-EBI ]   3.-.-.- [ BRENDA ]   3.-.-.- [ KEGG ]   
PhosPhoSitePlusQ86X67
Domaine pattern : Prosite (Expaxy)NUDIX (PS51462)    NUDIX_BOX (PS00893)   
Domains : Interpro (EBI)NADH_PPase-like_N    NUDIX_hydrolase_CS    NUDIX_hydrolase_dom    NUDIX_hydrolase_dom-like    Znr_NADH_PPase   
Domain families : Pfam (Sanger)NUDIX (PF00293)    NUDIX-like (PF09296)    zf-NADH-PPase (PF09297)   
Domain families : Pfam (NCBI)pfam00293    pfam09296    pfam09297   
Conserved Domain (NCBI)NUDT13
DMDM Disease mutations25961
Blocks (Seattle)NUDT13
SuperfamilyQ86X67
Human Protein AtlasENSG00000166321
Peptide AtlasQ86X67
HPRD10124
IPIIPI00455162   IPI00003191   IPI01011059   IPI01010937   IPI00514844   
Protein Interaction databases
DIP (DOE-UCLA)Q86X67
IntAct (EBI)Q86X67
FunCoupENSG00000166321
BioGRIDNUDT13
STRING (EMBL)NUDT13
ZODIACNUDT13
Ontologies - Pathways
QuickGOQ86X67
Ontology : AmiGOmitochondrial matrix  nucleobase-containing small molecule interconversion  pyrophosphatase activity  metal ion binding  
Ontology : EGO-EBImitochondrial matrix  nucleobase-containing small molecule interconversion  pyrophosphatase activity  metal ion binding  
NDEx NetworkNUDT13
Atlas of Cancer Signalling NetworkNUDT13
Wikipedia pathwaysNUDT13
Orthology - Evolution
OrthoDB25961
GeneTree (enSembl)ENSG00000166321
Phylogenetic Trees/Animal Genes : TreeFamNUDT13
HOVERGENQ86X67
HOGENOMQ86X67
Homologs : HomoloGeneNUDT13
Homology/Alignments : Family Browser (UCSC)NUDT13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUDT13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUDT13
dbVarNUDT13
ClinVarNUDT13
1000_GenomesNUDT13 
Exome Variant ServerNUDT13
ExAC (Exome Aggregation Consortium)NUDT13 (select the gene name)
Genetic variants : HAPMAP25961
Genomic Variants (DGV)NUDT13 [DGVbeta]
DECIPHERNUDT13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUDT13 
Mutations
ICGC Data PortalNUDT13 
TCGA Data PortalNUDT13 
Broad Tumor PortalNUDT13
OASIS PortalNUDT13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUDT13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUDT13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch NUDT13
DgiDB (Drug Gene Interaction Database)NUDT13
DoCM (Curated mutations)NUDT13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUDT13 (select a term)
intoGenNUDT13
Cancer3DNUDT13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609233   
Orphanet
MedgenNUDT13
Genetic Testing Registry NUDT13
NextProtQ86X67 [Medical]
TSGene25961
GENETestsNUDT13
Target ValidationNUDT13
Huge Navigator NUDT13 [HugePedia]
snp3D : Map Gene to Disease25961
BioCentury BCIQNUDT13
ClinGenNUDT13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25961
Chemical/Pharm GKB GenePA38700
Clinical trialNUDT13
Miscellaneous
canSAR (ICR)NUDT13 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUDT13
EVEXNUDT13
GoPubMedNUDT13
iHOPNUDT13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:25 CEST 2017

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