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NUDT16 (nudix hydrolase 16)

Identity

Alias_namesnudix (nucleoside diphosphate linked moiety X)-type motif 16
Alias_symbol (synonym)FLJ31265
Other alias-
HGNC (Hugo) NUDT16
LocusID (NCBI) 131870
Atlas_Id 52962
Location 3q22.1  [Link to chromosome band 3q22]
Location_base_pair Starts at 131381671 and ends at 131388830 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NUDT16 (3q22.1) / ASXL1 (20q11.21)NUDT16 (3q22.1) / PARG (10q11.23)NUDT16 (3q22.1) / WFDC2 (20q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUDT16   26442
Cards
Entrez_Gene (NCBI)NUDT16  131870  nudix hydrolase 16
Aliases
GeneCards (Weizmann)NUDT16
Ensembl hg19 (Hinxton)ENSG00000198585 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198585 [Gene_View]  chr3:131381671-131388830 [Contig_View]  NUDT16 [Vega]
ICGC DataPortalENSG00000198585
TCGA cBioPortalNUDT16
AceView (NCBI)NUDT16
Genatlas (Paris)NUDT16
WikiGenes131870
SOURCE (Princeton)NUDT16
Genetics Home Reference (NIH)NUDT16
Genomic and cartography
GoldenPath hg38 (UCSC)NUDT16  -     chr3:131381671-131388830 +  3q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUDT16  -     3q22.1   [Description]    (hg19-Feb_2009)
EnsemblNUDT16 - 3q22.1 [CytoView hg19]  NUDT16 - 3q22.1 [CytoView hg38]
Mapping of homologs : NCBINUDT16 [Mapview hg19]  NUDT16 [Mapview hg38]
OMIM617381   
Gene and transcription
Genbank (Entrez)AK055827 AK091353 AK093567 AK295852 AK304650
RefSeq transcript (Entrez)NM_001171905 NM_001171906 NM_152395
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NUDT16
Cluster EST : UnigeneHs.282050 [ NCBI ]
CGAP (NCI)Hs.282050
Alternative Splicing GalleryENSG00000198585
Gene ExpressionNUDT16 [ NCBI-GEO ]   NUDT16 [ EBI - ARRAY_EXPRESS ]   NUDT16 [ SEEK ]   NUDT16 [ MEM ]
Gene Expression Viewer (FireBrowse)NUDT16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)131870
GTEX Portal (Tissue expression)NUDT16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DE0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DE0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DE0
Splice isoforms : SwissVarQ96DE0
PhosPhoSitePlusQ96DE0
Domaine pattern : Prosite (Expaxy)NUDIX (PS51462)   
Domains : Interpro (EBI)NUDIX_hydrolase_dom    NUDIX_hydrolase_dom-like   
Domain families : Pfam (Sanger)NUDIX (PF00293)   
Domain families : Pfam (NCBI)pfam00293   
Conserved Domain (NCBI)NUDT16
DMDM Disease mutations131870
Blocks (Seattle)NUDT16
PDB (SRS)2XSQ    3COU    3MGM   
PDB (PDBSum)2XSQ    3COU    3MGM   
PDB (IMB)2XSQ    3COU    3MGM   
PDB (RSDB)2XSQ    3COU    3MGM   
Structural Biology KnowledgeBase2XSQ    3COU    3MGM   
SCOP (Structural Classification of Proteins)2XSQ    3COU    3MGM   
CATH (Classification of proteins structures)2XSQ    3COU    3MGM   
SuperfamilyQ96DE0
Human Protein AtlasENSG00000198585
Peptide AtlasQ96DE0
HPRD08097
IPIIPI00783497   IPI00980698   IPI00955874   IPI00797013   
Protein Interaction databases
DIP (DOE-UCLA)Q96DE0
IntAct (EBI)Q96DE0
FunCoupENSG00000198585
BioGRIDNUDT16
STRING (EMBL)NUDT16
ZODIACNUDT16
Ontologies - Pathways
QuickGOQ96DE0
Ontology : AmiGOmagnesium ion binding  mRNA binding  GTP binding  nucleus  nucleoplasm  nucleolus  cytoplasm  adenosine to inosine editing  mRNA catabolic process  proteolysis  metalloexopeptidase activity  positive regulation of cell proliferation  snoRNA catabolic process  dephosphorylation  manganese ion binding  snoRNA binding  nucleobase-containing small molecule catabolic process  dITP catabolic process  dITP diphosphatase activity  identical protein binding  protein homodimerization activity  IDP catabolic process  m7G(5')pppN diphosphatase activity  cobalt ion binding  chromosome organization  positive regulation of cell cycle process  dIDP diphosphatase activity  nucleotide phosphatase activity, acting on free nucleotides  XDP catabolic process  XTP binding  ITP binding  negative regulation of rRNA processing  positive regulation of double-strand break repair  
Ontology : EGO-EBImagnesium ion binding  mRNA binding  GTP binding  nucleus  nucleoplasm  nucleolus  cytoplasm  adenosine to inosine editing  mRNA catabolic process  proteolysis  metalloexopeptidase activity  positive regulation of cell proliferation  snoRNA catabolic process  dephosphorylation  manganese ion binding  snoRNA binding  nucleobase-containing small molecule catabolic process  dITP catabolic process  dITP diphosphatase activity  identical protein binding  protein homodimerization activity  IDP catabolic process  m7G(5')pppN diphosphatase activity  cobalt ion binding  chromosome organization  positive regulation of cell cycle process  dIDP diphosphatase activity  nucleotide phosphatase activity, acting on free nucleotides  XDP catabolic process  XTP binding  ITP binding  negative regulation of rRNA processing  positive regulation of double-strand break repair  
Pathways : KEGGPurine metabolism    RNA degradation   
NDEx NetworkNUDT16
Atlas of Cancer Signalling NetworkNUDT16
Wikipedia pathwaysNUDT16
Orthology - Evolution
OrthoDB131870
GeneTree (enSembl)ENSG00000198585
Phylogenetic Trees/Animal Genes : TreeFamNUDT16
HOVERGENQ96DE0
HOGENOMQ96DE0
Homologs : HomoloGeneNUDT16
Homology/Alignments : Family Browser (UCSC)NUDT16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUDT16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUDT16
dbVarNUDT16
ClinVarNUDT16
1000_GenomesNUDT16 
Exome Variant ServerNUDT16
ExAC (Exome Aggregation Consortium)NUDT16 (select the gene name)
Genetic variants : HAPMAP131870
Genomic Variants (DGV)NUDT16 [DGVbeta]
DECIPHERNUDT16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUDT16 
Mutations
ICGC Data PortalNUDT16 
TCGA Data PortalNUDT16 
Broad Tumor PortalNUDT16
OASIS PortalNUDT16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUDT16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUDT16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUDT16
DgiDB (Drug Gene Interaction Database)NUDT16
DoCM (Curated mutations)NUDT16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUDT16 (select a term)
intoGenNUDT16
Cancer3DNUDT16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617381   
Orphanet
MedgenNUDT16
Genetic Testing Registry NUDT16
NextProtQ96DE0 [Medical]
TSGene131870
GENETestsNUDT16
Target ValidationNUDT16
Huge Navigator NUDT16 [HugePedia]
snp3D : Map Gene to Disease131870
BioCentury BCIQNUDT16
ClinGenNUDT16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD131870
Chemical/Pharm GKB GenePA134955224
Clinical trialNUDT16
Miscellaneous
canSAR (ICR)NUDT16 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUDT16
EVEXNUDT16
GoPubMedNUDT16
iHOPNUDT16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:09:33 CEST 2017

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