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NUDT16L1 (nudix hydrolase 16 like 1)

Identity

Other aliasSDOS
HGNC (Hugo) NUDT16L1
LocusID (NCBI) 84309
Atlas_Id 56734
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 4693693 and ends at 4695859 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NUDT16L1 (16p13.3) / FAHD1 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUDT16L1   28154
Cards
Entrez_Gene (NCBI)NUDT16L1  84309  nudix hydrolase 16 like 1
AliasesSDOS
GeneCards (Weizmann)NUDT16L1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:4693693-4695859 [Contig_View]  NUDT16L1 [Vega]
TCGA cBioPortalNUDT16L1
AceView (NCBI)NUDT16L1
Genatlas (Paris)NUDT16L1
WikiGenes84309
SOURCE (Princeton)NUDT16L1
Genetics Home Reference (NIH)NUDT16L1
Genomic and cartography
GoldenPath hg38 (UCSC)NUDT16L1  -     chr16:4693693-4695859 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUDT16L1  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblNUDT16L1 - 16p13.3 [CytoView hg19]  NUDT16L1 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBINUDT16L1 [Mapview hg19]  NUDT16L1 [Mapview hg38]
OMIM617338   
Gene and transcription
Genbank (Entrez)AK092642 AK315456 BC006223 BQ923183 BU739233
RefSeq transcript (Entrez)NM_001193452 NM_032349
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NUDT16L1
Cluster EST : UnigeneHs.513315 [ NCBI ]
CGAP (NCI)Hs.513315
Gene ExpressionNUDT16L1 [ NCBI-GEO ]   NUDT16L1 [ EBI - ARRAY_EXPRESS ]   NUDT16L1 [ SEEK ]   NUDT16L1 [ MEM ]
Gene Expression Viewer (FireBrowse)NUDT16L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84309
GTEX Portal (Tissue expression)NUDT16L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRJ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRJ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRJ7
Splice isoforms : SwissVarQ9BRJ7
PhosPhoSitePlusQ9BRJ7
Domains : Interpro (EBI)NUDIX_hydrolase_dom-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NUDT16L1
DMDM Disease mutations84309
Blocks (Seattle)NUDT16L1
PDB (SRS)3KVH   
PDB (PDBSum)3KVH   
PDB (IMB)3KVH   
PDB (RSDB)3KVH   
Structural Biology KnowledgeBase3KVH   
SCOP (Structural Classification of Proteins)3KVH   
CATH (Classification of proteins structures)3KVH   
SuperfamilyQ9BRJ7
Peptide AtlasQ9BRJ7
IPIIPI00031650   IPI00168009   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRJ7
IntAct (EBI)Q9BRJ7
BioGRIDNUDT16L1
STRING (EMBL)NUDT16L1
ZODIACNUDT16L1
Ontologies - Pathways
QuickGOQ9BRJ7
Ontology : AmiGORNA binding  protein binding  nucleus  cytoplasm  snoRNA binding  protein homodimerization activity  m7G(5')pppN diphosphatase activity  m7G(5')pppN diphosphatase activity  negative regulation of double-strand break repair via nonhomologous end joining  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  cytoplasm  snoRNA binding  protein homodimerization activity  m7G(5')pppN diphosphatase activity  m7G(5')pppN diphosphatase activity  negative regulation of double-strand break repair via nonhomologous end joining  
Pathways : KEGGProteoglycans in cancer   
NDEx NetworkNUDT16L1
Atlas of Cancer Signalling NetworkNUDT16L1
Wikipedia pathwaysNUDT16L1
Orthology - Evolution
OrthoDB84309
Phylogenetic Trees/Animal Genes : TreeFamNUDT16L1
HOVERGENQ9BRJ7
HOGENOMQ9BRJ7
Homologs : HomoloGeneNUDT16L1
Homology/Alignments : Family Browser (UCSC)NUDT16L1
Gene fusions - Rearrangements
Tumor Fusion PortalNUDT16L1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUDT16L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUDT16L1
dbVarNUDT16L1
ClinVarNUDT16L1
1000_GenomesNUDT16L1 
Exome Variant ServerNUDT16L1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP84309
Genomic Variants (DGV)NUDT16L1 [DGVbeta]
DECIPHERNUDT16L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUDT16L1 
Mutations
ICGC Data PortalNUDT16L1 
TCGA Data PortalNUDT16L1 
Broad Tumor PortalNUDT16L1
OASIS PortalNUDT16L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUDT16L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUDT16L1
BioMutasearch NUDT16L1
DgiDB (Drug Gene Interaction Database)NUDT16L1
DoCM (Curated mutations)NUDT16L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUDT16L1 (select a term)
intoGenNUDT16L1
Cancer3DNUDT16L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617338   
Orphanet
DisGeNETNUDT16L1
MedgenNUDT16L1
Genetic Testing Registry NUDT16L1
NextProtQ9BRJ7 [Medical]
TSGene84309
GENETestsNUDT16L1
Target ValidationNUDT16L1
Huge Navigator NUDT16L1 [HugePedia]
snp3D : Map Gene to Disease84309
BioCentury BCIQNUDT16L1
ClinGenNUDT16L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84309
Chemical/Pharm GKB GenePA134977238
Clinical trialNUDT16L1
Miscellaneous
canSAR (ICR)NUDT16L1 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUDT16L1
EVEXNUDT16L1
GoPubMedNUDT16L1
iHOPNUDT16L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:26:58 CET 2017

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