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NUDT17 (nudix hydrolase 17)

Identity

Alias_namesnudix (nucleoside diphosphate linked moiety X)-type motif 17
Alias_symbol (synonym)FLJ34433
Other alias-
HGNC (Hugo) NUDT17
LocusID (NCBI) 200035
Atlas_Id 71022
Location 1q21.1  [Link to chromosome band 1q21]
Location_base_pair Starts at 145845633 and ends at 145848575 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUDT17   26618
Cards
Entrez_Gene (NCBI)NUDT17  200035  nudix hydrolase 17
Aliases
GeneCards (Weizmann)NUDT17
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:145845633-145848575 [Contig_View]  NUDT17 [Vega]
TCGA cBioPortalNUDT17
AceView (NCBI)NUDT17
Genatlas (Paris)NUDT17
WikiGenes200035
SOURCE (Princeton)NUDT17
Genetics Home Reference (NIH)NUDT17
Genomic and cartography
GoldenPath hg38 (UCSC)NUDT17  -     chr1:145845633-145848575 +  1q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUDT17  -     1q21.1   [Description]    (hg19-Feb_2009)
EnsemblNUDT17 - 1q21.1 [CytoView hg19]  NUDT17 - 1q21.1 [CytoView hg38]
Mapping of homologs : NCBINUDT17 [Mapview hg19]  NUDT17 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA287243 AK091752 AK298083 BC046352 BG820863
RefSeq transcript (Entrez)NM_001012758
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NUDT17
Cluster EST : UnigeneHs.585066 [ NCBI ]
CGAP (NCI)Hs.585066
Gene ExpressionNUDT17 [ NCBI-GEO ]   NUDT17 [ EBI - ARRAY_EXPRESS ]   NUDT17 [ SEEK ]   NUDT17 [ MEM ]
Gene Expression Viewer (FireBrowse)NUDT17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200035
GTEX Portal (Tissue expression)NUDT17
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C025   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C025  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C025
Splice isoforms : SwissVarP0C025
PhosPhoSitePlusP0C025
Domaine pattern : Prosite (Expaxy)NUDIX (PS51462)   
Domains : Interpro (EBI)NUDIX_hydrolase_dom    NUDIX_hydrolase_dom-like    Nudt17_dom   
Domain families : Pfam (Sanger)NUDIX (PF00293)   
Domain families : Pfam (NCBI)pfam00293   
Conserved Domain (NCBI)NUDT17
DMDM Disease mutations200035
Blocks (Seattle)NUDT17
SuperfamilyP0C025
Peptide AtlasP0C025
HPRD18573
IPIIPI00455451   IPI00644295   
Protein Interaction databases
DIP (DOE-UCLA)P0C025
IntAct (EBI)P0C025
BioGRIDNUDT17
STRING (EMBL)NUDT17
ZODIACNUDT17
Ontologies - Pathways
QuickGOP0C025
Ontology : AmiGOhydrolase activity  metal ion binding  
Ontology : EGO-EBIhydrolase activity  metal ion binding  
NDEx NetworkNUDT17
Atlas of Cancer Signalling NetworkNUDT17
Wikipedia pathwaysNUDT17
Orthology - Evolution
OrthoDB200035
Phylogenetic Trees/Animal Genes : TreeFamNUDT17
HOVERGENP0C025
HOGENOMP0C025
Homologs : HomoloGeneNUDT17
Homology/Alignments : Family Browser (UCSC)NUDT17
Gene fusions - Rearrangements
Tumor Fusion PortalNUDT17
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUDT17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUDT17
dbVarNUDT17
ClinVarNUDT17
1000_GenomesNUDT17 
Exome Variant ServerNUDT17
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP200035
Genomic Variants (DGV)NUDT17 [DGVbeta]
DECIPHERNUDT17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUDT17 
Mutations
ICGC Data PortalNUDT17 
TCGA Data PortalNUDT17 
Broad Tumor PortalNUDT17
OASIS PortalNUDT17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUDT17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUDT17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUDT17
DgiDB (Drug Gene Interaction Database)NUDT17
DoCM (Curated mutations)NUDT17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUDT17 (select a term)
intoGenNUDT17
Cancer3DNUDT17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETNUDT17
MedgenNUDT17
Genetic Testing Registry NUDT17
NextProtP0C025 [Medical]
TSGene200035
GENETestsNUDT17
Target ValidationNUDT17
Huge Navigator NUDT17 [HugePedia]
snp3D : Map Gene to Disease200035
BioCentury BCIQNUDT17
ClinGenNUDT17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200035
Chemical/Pharm GKB GenePA134890899
Clinical trialNUDT17
Miscellaneous
canSAR (ICR)NUDT17 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUDT17
EVEXNUDT17
GoPubMedNUDT17
iHOPNUDT17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:02:00 CET 2017

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