Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NUDT19 (nudix hydrolase 19)

Identity

Alias_namesnudix (nucleoside diphosphate linked moiety X)-type motif 19
Alias_symbol (synonym)RP2
Other alias
HGNC (Hugo) NUDT19
LocusID (NCBI) 390916
Atlas_Id 71024
Location 19q13.11  [Link to chromosome band 19q13]
Location_base_pair Starts at 32691961 and ends at 32713796 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NUDT19 (19q13.11) / SLC7A9 (19q13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUDT19   32036
Cards
Entrez_Gene (NCBI)NUDT19  390916  nudix hydrolase 19
AliasesRP2
GeneCards (Weizmann)NUDT19
Ensembl hg19 (Hinxton)ENSG00000213965 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213965 [Gene_View]  chr19:32691961-32713796 [Contig_View]  NUDT19 [Vega]
ICGC DataPortalENSG00000213965
TCGA cBioPortalNUDT19
AceView (NCBI)NUDT19
Genatlas (Paris)NUDT19
WikiGenes390916
SOURCE (Princeton)NUDT19
Genetics Home Reference (NIH)NUDT19
Genomic and cartography
GoldenPath hg38 (UCSC)NUDT19  -     chr19:32691961-32713796 +  19q13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUDT19  -     19q13.11   [Description]    (hg19-Feb_2009)
EnsemblNUDT19 - 19q13.11 [CytoView hg19]  NUDT19 - 19q13.11 [CytoView hg38]
Mapping of homologs : NCBINUDT19 [Mapview hg19]  NUDT19 [Mapview hg38]
Gene and transcription
Genbank (Entrez)CA438814 DA658958 DN998957
RefSeq transcript (Entrez)NM_001105570
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NUDT19
Cluster EST : UnigeneHs.203961 [ NCBI ]
CGAP (NCI)Hs.203961
Alternative Splicing GalleryENSG00000213965
Gene ExpressionNUDT19 [ NCBI-GEO ]   NUDT19 [ EBI - ARRAY_EXPRESS ]   NUDT19 [ SEEK ]   NUDT19 [ MEM ]
Gene Expression Viewer (FireBrowse)NUDT19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390916
GTEX Portal (Tissue expression)NUDT19
Human Protein AtlasENSG00000213965-NUDT19 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MXV4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MXV4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MXV4
Splice isoforms : SwissVarA8MXV4
PhosPhoSitePlusA8MXV4
Domaine pattern : Prosite (Expaxy)NUDIX (PS51462)   
Domains : Interpro (EBI)NUDIX_hydrolase_dom    NUDIX_hydrolase_dom-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NUDT19
DMDM Disease mutations390916
Blocks (Seattle)NUDT19
SuperfamilyA8MXV4
Human Protein Atlas [tissue]ENSG00000213965-NUDT19 [tissue]
Peptide AtlasA8MXV4
IPIIPI00869107   
Protein Interaction databases
DIP (DOE-UCLA)A8MXV4
IntAct (EBI)A8MXV4
FunCoupENSG00000213965
BioGRIDNUDT19
STRING (EMBL)NUDT19
ZODIACNUDT19
Ontologies - Pathways
QuickGOA8MXV4
Ontology : AmiGOreceptor binding  cellular_component  mitochondrion  peroxisomal matrix  biological_process  fatty acid beta-oxidation using acyl-CoA oxidase  metal ion binding  acyl-CoA hydrolase activity  
Ontology : EGO-EBIreceptor binding  cellular_component  mitochondrion  peroxisomal matrix  biological_process  fatty acid beta-oxidation using acyl-CoA oxidase  metal ion binding  acyl-CoA hydrolase activity  
Pathways : KEGGPeroxisome   
NDEx NetworkNUDT19
Atlas of Cancer Signalling NetworkNUDT19
Wikipedia pathwaysNUDT19
Orthology - Evolution
OrthoDB390916
GeneTree (enSembl)ENSG00000213965
Phylogenetic Trees/Animal Genes : TreeFamNUDT19
HOVERGENA8MXV4
HOGENOMA8MXV4
Homologs : HomoloGeneNUDT19
Homology/Alignments : Family Browser (UCSC)NUDT19
Gene fusions - Rearrangements
Tumor Fusion PortalNUDT19
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUDT19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUDT19
dbVarNUDT19
ClinVarNUDT19
1000_GenomesNUDT19 
Exome Variant ServerNUDT19
ExAC (Exome Aggregation Consortium)ENSG00000213965
GNOMAD BrowserENSG00000213965
Genetic variants : HAPMAP390916
Genomic Variants (DGV)NUDT19 [DGVbeta]
DECIPHERNUDT19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUDT19 
Mutations
ICGC Data PortalNUDT19 
TCGA Data PortalNUDT19 
Broad Tumor PortalNUDT19
OASIS PortalNUDT19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUDT19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUDT19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch NUDT19
DgiDB (Drug Gene Interaction Database)NUDT19
DoCM (Curated mutations)NUDT19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUDT19 (select a term)
intoGenNUDT19
Cancer3DNUDT19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETNUDT19
MedgenNUDT19
Genetic Testing Registry NUDT19
NextProtA8MXV4 [Medical]
TSGene390916
GENETestsNUDT19
Target ValidationNUDT19
Huge Navigator NUDT19 [HugePedia]
snp3D : Map Gene to Disease390916
BioCentury BCIQNUDT19
ClinGenNUDT19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390916
Chemical/Pharm GKB GenePA142671239
Clinical trialNUDT19
Miscellaneous
canSAR (ICR)NUDT19 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUDT19
EVEXNUDT19
GoPubMedNUDT19
iHOPNUDT19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 20:03:54 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.