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NUDT21 (nudix (nucleoside diphosphate linked moiety X)-type motif 21)

Identity

Alias_namesCPSF5
cleavage and polyadenylation specific factor 5, 25 kDa
cleavage and polyadenylation specific factor 5, 25 kD subunit
nudix (nucleoside diphosphate linked moiety X)-type motif 21
Alias_symbol (synonym)CFIM25
Other alias
HGNC (Hugo) NUDT21
LocusID (NCBI) 11051
Atlas_Id 71025
Location 16q12.2  [Link to chromosome band 16q12]
Location_base_pair Starts at 56463048 and ends at 56485261 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NUDT21 (16q12.2) / NUDT21 (16q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUDT21   13870
Cards
Entrez_Gene (NCBI)NUDT21  11051  nudix (nucleoside diphosphate linked moiety X)-type motif 21
AliasesCFIM25; CPSF5
GeneCards (Weizmann)NUDT21
Ensembl hg19 (Hinxton)ENSG00000167005 [Gene_View]  chr16:56463048-56485261 [Contig_View]  NUDT21 [Vega]
Ensembl hg38 (Hinxton)ENSG00000167005 [Gene_View]  chr16:56463048-56485261 [Contig_View]  NUDT21 [Vega]
ICGC DataPortalENSG00000167005
TCGA cBioPortalNUDT21
AceView (NCBI)NUDT21
Genatlas (Paris)NUDT21
WikiGenes11051
SOURCE (Princeton)NUDT21
Genetics Home Reference (NIH)NUDT21
Genomic and cartography
GoldenPath hg19 (UCSC)NUDT21  -     chr16:56463048-56485261 -  16q12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NUDT21  -     16q12.2   [Description]    (hg38-Dec_2013)
EnsemblNUDT21 - 16q12.2 [CytoView hg19]  NUDT21 - 16q12.2 [CytoView hg38]
Mapping of homologs : NCBINUDT21 [Mapview hg19]  NUDT21 [Mapview hg38]
OMIM604978   
Gene and transcription
Genbank (Entrez)AJ001810 AK312721 AL535307 AM392991 AM393219
RefSeq transcript (Entrez)NM_007006
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)NUDT21
Cluster EST : UnigeneHs.528834 [ NCBI ]
CGAP (NCI)Hs.528834
Alternative Splicing GalleryENSG00000167005
Gene ExpressionNUDT21 [ NCBI-GEO ]   NUDT21 [ EBI - ARRAY_EXPRESS ]   NUDT21 [ SEEK ]   NUDT21 [ MEM ]
Gene Expression Viewer (FireBrowse)NUDT21 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11051
GTEX Portal (Tissue expression)NUDT21
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43809   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43809  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43809
Splice isoforms : SwissVarO43809
PhosPhoSitePlusO43809
Domaine pattern : Prosite (Expaxy)NUDIX (PS51462)   
Domains : Interpro (EBI)Cleav_polyA_spec_factor_su5    NUDIX_hydrolase_dom    NUDIX_hydrolase_dom-like   
Domain families : Pfam (Sanger)NUDIX_2 (PF13869)   
Domain families : Pfam (NCBI)pfam13869   
Conserved Domain (NCBI)NUDT21
DMDM Disease mutations11051
Blocks (Seattle)NUDT21
PDB (SRS)2CL3    2J8Q    3BAP    3BHO    3MDG    3MDI    3N9U    3P5T    3P6Y    3Q2S    3Q2T   
PDB (PDBSum)2CL3    2J8Q    3BAP    3BHO    3MDG    3MDI    3N9U    3P5T    3P6Y    3Q2S    3Q2T   
PDB (IMB)2CL3    2J8Q    3BAP    3BHO    3MDG    3MDI    3N9U    3P5T    3P6Y    3Q2S    3Q2T   
PDB (RSDB)2CL3    2J8Q    3BAP    3BHO    3MDG    3MDI    3N9U    3P5T    3P6Y    3Q2S    3Q2T   
Structural Biology KnowledgeBase2CL3    2J8Q    3BAP    3BHO    3MDG    3MDI    3N9U    3P5T    3P6Y    3Q2S    3Q2T   
SCOP (Structural Classification of Proteins)2CL3    2J8Q    3BAP    3BHO    3MDG    3MDI    3N9U    3P5T    3P6Y    3Q2S    3Q2T   
CATH (Classification of proteins structures)2CL3    2J8Q    3BAP    3BHO    3MDG    3MDI    3N9U    3P5T    3P6Y    3Q2S    3Q2T   
SuperfamilyO43809
Human Protein AtlasENSG00000167005
Peptide AtlasO43809
HPRD05400
IPIIPI00646917   IPI00552186   
Protein Interaction databases
DIP (DOE-UCLA)O43809
IntAct (EBI)O43809
FunCoupENSG00000167005
BioGRIDNUDT21
STRING (EMBL)NUDT21
ZODIACNUDT21
Ontologies - Pathways
QuickGOO43809
Ontology : AmiGOmRNA splicing, via spliceosome  RNA binding  mRNA binding  protein binding  nucleus  nucleoplasm  centrosome  mRNA cleavage factor complex  transcription from RNA polymerase II promoter  termination of RNA polymerase II transcription  mRNA polyadenylation  mRNA processing  RNA splicing  gene expression  hydrolase activity  AU-rich element binding  mRNA 3'-end processing  paraspeckles  protein homodimerization activity  histone deacetylase binding  poly(A) RNA binding  protein tetramerization  
Ontology : EGO-EBImRNA splicing, via spliceosome  RNA binding  mRNA binding  protein binding  nucleus  nucleoplasm  centrosome  mRNA cleavage factor complex  transcription from RNA polymerase II promoter  termination of RNA polymerase II transcription  mRNA polyadenylation  mRNA processing  RNA splicing  gene expression  hydrolase activity  AU-rich element binding  mRNA 3'-end processing  paraspeckles  protein homodimerization activity  histone deacetylase binding  poly(A) RNA binding  protein tetramerization  
Pathways : KEGGmRNA surveillance pathway   
NDEx NetworkNUDT21
Atlas of Cancer Signalling NetworkNUDT21
Wikipedia pathwaysNUDT21
Orthology - Evolution
OrthoDB11051
GeneTree (enSembl)ENSG00000167005
Phylogenetic Trees/Animal Genes : TreeFamNUDT21
HOVERGENO43809
HOGENOMO43809
Homologs : HomoloGeneNUDT21
Homology/Alignments : Family Browser (UCSC)NUDT21
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUDT21 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUDT21
dbVarNUDT21
ClinVarNUDT21
1000_GenomesNUDT21 
Exome Variant ServerNUDT21
ExAC (Exome Aggregation Consortium)NUDT21 (select the gene name)
Genetic variants : HAPMAP11051
Genomic Variants (DGV)NUDT21 [DGVbeta]
DECIPHER (Syndromes)16:56463048-56485261  ENSG00000167005
CONAN: Copy Number AnalysisNUDT21 
Mutations
ICGC Data PortalNUDT21 
TCGA Data PortalNUDT21 
Broad Tumor PortalNUDT21
OASIS PortalNUDT21 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUDT21  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUDT21
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUDT21
DgiDB (Drug Gene Interaction Database)NUDT21
DoCM (Curated mutations)NUDT21 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUDT21 (select a term)
intoGenNUDT21
Cancer3DNUDT21(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604978   
Orphanet
MedgenNUDT21
Genetic Testing Registry NUDT21
NextProtO43809 [Medical]
TSGene11051
GENETestsNUDT21
Huge Navigator NUDT21 [HugePedia]
snp3D : Map Gene to Disease11051
BioCentury BCIQNUDT21
ClinGenNUDT21
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11051
Chemical/Pharm GKB GenePA26845
Clinical trialNUDT21
Miscellaneous
canSAR (ICR)NUDT21 (select the gene name)
Probes
Litterature
PubMed63 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUDT21
EVEXNUDT21
GoPubMedNUDT21
iHOPNUDT21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:35:33 CET 2017

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