Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NUDT22 (nudix hydrolase 22)

Identity

Alias_namesnudix (nucleoside diphosphate linked moiety X)-type motif 22
Alias_symbol (synonym)MGC13045
Other alias-
HGNC (Hugo) NUDT22
LocusID (NCBI) 84304
Atlas_Id 71026
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 64226258 and ends at 64230016 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DNAJC4 (11q13.1) / NUDT22 (11q13.1)NUDT22 (11q13.1) / NUDT22 (11q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUDT22   28189
Cards
Entrez_Gene (NCBI)NUDT22  84304  nudix hydrolase 22
Aliases
GeneCards (Weizmann)NUDT22
Ensembl hg19 (Hinxton)ENSG00000149761 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149761 [Gene_View]  chr11:64226258-64230016 [Contig_View]  NUDT22 [Vega]
ICGC DataPortalENSG00000149761
TCGA cBioPortalNUDT22
AceView (NCBI)NUDT22
Genatlas (Paris)NUDT22
WikiGenes84304
SOURCE (Princeton)NUDT22
Genetics Home Reference (NIH)NUDT22
Genomic and cartography
GoldenPath hg38 (UCSC)NUDT22  -     chr11:64226258-64230016 +  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUDT22  -     11q13.1   [Description]    (hg19-Feb_2009)
EnsemblNUDT22 - 11q13.1 [CytoView hg19]  NUDT22 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBINUDT22 [Mapview hg19]  NUDT22 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK308555 BC006129 BG705568 BM045237 BM923060
RefSeq transcript (Entrez)NM_001128612 NM_001128613 NM_001271831 NM_032344
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NUDT22
Cluster EST : UnigeneHs.744098 [ NCBI ]
CGAP (NCI)Hs.744098
Alternative Splicing GalleryENSG00000149761
Gene ExpressionNUDT22 [ NCBI-GEO ]   NUDT22 [ EBI - ARRAY_EXPRESS ]   NUDT22 [ SEEK ]   NUDT22 [ MEM ]
Gene Expression Viewer (FireBrowse)NUDT22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84304
GTEX Portal (Tissue expression)NUDT22
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRQ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRQ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRQ3
Splice isoforms : SwissVarQ9BRQ3
PhosPhoSitePlusQ9BRQ3
Domaine pattern : Prosite (Expaxy)NUDIX (PS51462)   
Domains : Interpro (EBI)NUDIX_hydrolase_dom    NUDIX_hydrolase_dom-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NUDT22
DMDM Disease mutations84304
Blocks (Seattle)NUDT22
SuperfamilyQ9BRQ3
Human Protein AtlasENSG00000149761
Peptide AtlasQ9BRQ3
HPRD14434
IPIIPI00815958   IPI01019009   IPI00031645   IPI00953165   IPI01014685   IPI01010721   IPI01015069   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRQ3
IntAct (EBI)Q9BRQ3
FunCoupENSG00000149761
BioGRIDNUDT22
STRING (EMBL)NUDT22
ZODIACNUDT22
Ontologies - Pathways
QuickGOQ9BRQ3
Ontology : AmiGOprotein binding  nucleoplasm  hydrolase activity  
Ontology : EGO-EBIprotein binding  nucleoplasm  hydrolase activity  
NDEx NetworkNUDT22
Atlas of Cancer Signalling NetworkNUDT22
Wikipedia pathwaysNUDT22
Orthology - Evolution
OrthoDB84304
GeneTree (enSembl)ENSG00000149761
Phylogenetic Trees/Animal Genes : TreeFamNUDT22
HOVERGENQ9BRQ3
HOGENOMQ9BRQ3
Homologs : HomoloGeneNUDT22
Homology/Alignments : Family Browser (UCSC)NUDT22
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUDT22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUDT22
dbVarNUDT22
ClinVarNUDT22
1000_GenomesNUDT22 
Exome Variant ServerNUDT22
ExAC (Exome Aggregation Consortium)NUDT22 (select the gene name)
Genetic variants : HAPMAP84304
Genomic Variants (DGV)NUDT22 [DGVbeta]
DECIPHERNUDT22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUDT22 
Mutations
ICGC Data PortalNUDT22 
TCGA Data PortalNUDT22 
Broad Tumor PortalNUDT22
OASIS PortalNUDT22 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUDT22  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUDT22
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUDT22
DgiDB (Drug Gene Interaction Database)NUDT22
DoCM (Curated mutations)NUDT22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUDT22 (select a term)
intoGenNUDT22
Cancer3DNUDT22(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNUDT22
Genetic Testing Registry NUDT22
NextProtQ9BRQ3 [Medical]
TSGene84304
GENETestsNUDT22
Target ValidationNUDT22
Huge Navigator NUDT22 [HugePedia]
snp3D : Map Gene to Disease84304
BioCentury BCIQNUDT22
ClinGenNUDT22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84304
Chemical/Pharm GKB GenePA142671240
Clinical trialNUDT22
Miscellaneous
canSAR (ICR)NUDT22 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUDT22
EVEXNUDT22
GoPubMedNUDT22
iHOPNUDT22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:32:26 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.