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NUDT5 (nudix hydrolase 5)

Identity

Alias (NCBI)YSA1
YSA1H
YSAH1
hNUDT5
HGNC (Hugo) NUDT5
HGNC Alias symbhYSAH1
YSA1H
HGNC Previous namenudix (nucleoside diphosphate linked moiety X)-type motif 5
LocusID (NCBI) 11164
Atlas_Id 57484
Location 10p14  [Link to chromosome band 10p14]
Location_base_pair Starts at 12165330 and ends at 12195891 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NUDT5 (10p13) / WDR90 (16p13.3)NUDT5 (10p13) / ZMYND11 (10p15.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)NUDT5   8052
Cards
Entrez_Gene (NCBI)NUDT5    nudix hydrolase 5
AliasesYSA1; YSA1H; YSAH1; hNUDT5
GeneCards (Weizmann)NUDT5
Ensembl hg19 (Hinxton)ENSG00000165609 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165609 [Gene_View]  ENSG00000165609 [Sequence]  chr10:12165330-12195891 [Contig_View]  NUDT5 [Vega]
ICGC DataPortalENSG00000165609
TCGA cBioPortalNUDT5
AceView (NCBI)NUDT5
Genatlas (Paris)NUDT5
SOURCE (Princeton)NUDT5
Genetics Home Reference (NIH)NUDT5
Genomic and cartography
GoldenPath hg38 (UCSC)NUDT5  -     chr10:12165330-12195891 -  10p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUDT5  -     10p14   [Description]    (hg19-Feb_2009)
GoldenPathNUDT5 - 10p14 [CytoView hg19]  NUDT5 - 10p14 [CytoView hg38]
ImmunoBaseENSG00000165609
Genome Data Viewer NCBINUDT5 [Mapview hg19]  
OMIM609230   
Gene and transcription
Genbank (Entrez)AF155832 AF161464 AF218818 AK123731 AK291131
RefSeq transcript (Entrez)NM_001321647 NM_001321648 NM_014142
Consensus coding sequences : CCDS (NCBI)NUDT5
Gene ExpressionNUDT5 [ NCBI-GEO ]   NUDT5 [ EBI - ARRAY_EXPRESS ]   NUDT5 [ SEEK ]   NUDT5 [ MEM ]
Gene Expression Viewer (FireBrowse)NUDT5 [ Firebrowse - Broad ]
GenevisibleExpression of NUDT5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11164
GTEX Portal (Tissue expression)NUDT5
Human Protein AtlasENSG00000165609-NUDT5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKK9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKK9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKK9
PhosPhoSitePlusQ9UKK9
Domaine pattern : Prosite (Expaxy)NUDIX (PS51462)    NUDIX_BOX (PS00893)   
Domains : Interpro (EBI)Nudix_hydrolase    NUDIX_hydrolase-like_dom_sf    NUDIX_hydrolase_CS    NUDIX_hydrolase_dom   
Domain families : Pfam (Sanger)NUDIX (PF00293)   
Domain families : Pfam (NCBI)pfam00293   
Conserved Domain (NCBI)NUDT5
PDB (RSDB)2DSB    2DSC    2DSD    3AC9    3ACA    3BM4    3L85    5NQR    5NWH    5QJ4    5QJ5    5QJ6    5QJ7    5QJ8    5QJ9    5QJA    5QJB    5QJC    5QJD    5QJE    5QJF    5QJG    5QJH    5QJI    5QJJ    5QJK    5QJL    5QJM    5QJN    5QJO    5QJP    5QJQ    5QJR    5QJS    5QJT    5QJU    5QJV    5QJW    5QJX    5QJY    5QJZ    5QK0    5QK1    5QK2    5QK3    5QK4    5QK5    5QK6    5QK7    5QK8    5QK9    5QKA    5QKB    5QTL    5QTM    5QTN    5QTO    5QTP    5QTQ    5QTR    5QTS    6GRU   
PDB Europe2DSB    2DSC    2DSD    3AC9    3ACA    3BM4    3L85    5NQR    5NWH    5QJ4    5QJ5    5QJ6    5QJ7    5QJ8    5QJ9    5QJA    5QJB    5QJC    5QJD    5QJE    5QJF    5QJG    5QJH    5QJI    5QJJ    5QJK    5QJL    5QJM    5QJN    5QJO    5QJP    5QJQ    5QJR    5QJS    5QJT    5QJU    5QJV    5QJW    5QJX    5QJY    5QJZ    5QK0    5QK1    5QK2    5QK3    5QK4    5QK5    5QK6    5QK7    5QK8    5QK9    5QKA    5QKB    5QTL    5QTM    5QTN    5QTO    5QTP    5QTQ    5QTR    5QTS    6GRU   
PDB (PDBSum)2DSB    2DSC    2DSD    3AC9    3ACA    3BM4    3L85    5NQR    5NWH    5QJ4    5QJ5    5QJ6    5QJ7    5QJ8    5QJ9    5QJA    5QJB    5QJC    5QJD    5QJE    5QJF    5QJG    5QJH    5QJI    5QJJ    5QJK    5QJL    5QJM    5QJN    5QJO    5QJP    5QJQ    5QJR    5QJS    5QJT    5QJU    5QJV    5QJW    5QJX    5QJY    5QJZ    5QK0    5QK1    5QK2    5QK3    5QK4    5QK5    5QK6    5QK7    5QK8    5QK9    5QKA    5QKB    5QTL    5QTM    5QTN    5QTO    5QTP    5QTQ    5QTR    5QTS    6GRU   
PDB (IMB)2DSB    2DSC    2DSD    3AC9    3ACA    3BM4    3L85    5NQR    5NWH    5QJ4    5QJ5    5QJ6    5QJ7    5QJ8    5QJ9    5QJA    5QJB    5QJC    5QJD    5QJE    5QJF    5QJG    5QJH    5QJI    5QJJ    5QJK    5QJL    5QJM    5QJN    5QJO    5QJP    5QJQ    5QJR    5QJS    5QJT    5QJU    5QJV    5QJW    5QJX    5QJY    5QJZ    5QK0    5QK1    5QK2    5QK3    5QK4    5QK5    5QK6    5QK7    5QK8    5QK9    5QKA    5QKB    5QTL    5QTM    5QTN    5QTO    5QTP    5QTQ    5QTR    5QTS    6GRU   
Structural Biology KnowledgeBase2DSB    2DSC    2DSD    3AC9    3ACA    3BM4    3L85    5NQR    5NWH    5QJ4    5QJ5    5QJ6    5QJ7    5QJ8    5QJ9    5QJA    5QJB    5QJC    5QJD    5QJE    5QJF    5QJG    5QJH    5QJI    5QJJ    5QJK    5QJL    5QJM    5QJN    5QJO    5QJP    5QJQ    5QJR    5QJS    5QJT    5QJU    5QJV    5QJW    5QJX    5QJY    5QJZ    5QK0    5QK1    5QK2    5QK3    5QK4    5QK5    5QK6    5QK7    5QK8    5QK9    5QKA    5QKB    5QTL    5QTM    5QTN    5QTO    5QTP    5QTQ    5QTR    5QTS    6GRU   
SCOP (Structural Classification of Proteins)2DSB    2DSC    2DSD    3AC9    3ACA    3BM4    3L85    5NQR    5NWH    5QJ4    5QJ5    5QJ6    5QJ7    5QJ8    5QJ9    5QJA    5QJB    5QJC    5QJD    5QJE    5QJF    5QJG    5QJH    5QJI    5QJJ    5QJK    5QJL    5QJM    5QJN    5QJO    5QJP    5QJQ    5QJR    5QJS    5QJT    5QJU    5QJV    5QJW    5QJX    5QJY    5QJZ    5QK0    5QK1    5QK2    5QK3    5QK4    5QK5    5QK6    5QK7    5QK8    5QK9    5QKA    5QKB    5QTL    5QTM    5QTN    5QTO    5QTP    5QTQ    5QTR    5QTS    6GRU   
CATH (Classification of proteins structures)2DSB    2DSC    2DSD    3AC9    3ACA    3BM4    3L85    5NQR    5NWH    5QJ4    5QJ5    5QJ6    5QJ7    5QJ8    5QJ9    5QJA    5QJB    5QJC    5QJD    5QJE    5QJF    5QJG    5QJH    5QJI    5QJJ    5QJK    5QJL    5QJM    5QJN    5QJO    5QJP    5QJQ    5QJR    5QJS    5QJT    5QJU    5QJV    5QJW    5QJX    5QJY    5QJZ    5QK0    5QK1    5QK2    5QK3    5QK4    5QK5    5QK6    5QK7    5QK8    5QK9    5QKA    5QKB    5QTL    5QTM    5QTN    5QTO    5QTP    5QTQ    5QTR    5QTS    6GRU   
SuperfamilyQ9UKK9
AlphaFold pdb e-kbQ9UKK9   
Human Protein Atlas [tissue]ENSG00000165609-NUDT5 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q9UKK9
IntAct (EBI)Q9UKK9
BioGRIDNUDT5
STRING (EMBL)NUDT5
ZODIACNUDT5
Ontologies - Pathways
QuickGOQ9UKK9
Ontology : AmiGOmagnesium ion binding  protein binding  nucleus  nucleus  nucleus  cytosol  chromatin remodeling  nucleoside phosphate metabolic process  nucleotide metabolic process  ribonucleoside diphosphate catabolic process  nucleotidyltransferase activity  ADP-sugar diphosphatase activity  D-ribose catabolic process  D-ribose catabolic process  ribose phosphate metabolic process  snoRNA binding  nucleobase-containing small molecule catabolic process  identical protein binding  protein homodimerization activity  8-oxo-dGDP phosphatase activity  8-oxo-GDP phosphatase activity  ADP-ribose diphosphatase activity  ADP-ribose diphosphatase activity  ADP-ribose diphosphatase activity  m7G(5')pppN diphosphatase activity  extracellular exosome  ATP generation from poly-ADP-D-ribose  
Ontology : EGO-EBImagnesium ion binding  protein binding  nucleus  nucleus  nucleus  cytosol  chromatin remodeling  nucleoside phosphate metabolic process  nucleotide metabolic process  ribonucleoside diphosphate catabolic process  nucleotidyltransferase activity  ADP-sugar diphosphatase activity  D-ribose catabolic process  D-ribose catabolic process  ribose phosphate metabolic process  snoRNA binding  nucleobase-containing small molecule catabolic process  identical protein binding  protein homodimerization activity  8-oxo-dGDP phosphatase activity  8-oxo-GDP phosphatase activity  ADP-ribose diphosphatase activity  ADP-ribose diphosphatase activity  ADP-ribose diphosphatase activity  m7G(5')pppN diphosphatase activity  extracellular exosome  ATP generation from poly-ADP-D-ribose  
Pathways : KEGGPurine metabolism   
NDEx NetworkNUDT5
Atlas of Cancer Signalling NetworkNUDT5
Wikipedia pathwaysNUDT5
Orthology - Evolution
OrthoDB11164
GeneTree (enSembl)ENSG00000165609
Phylogenetic Trees/Animal Genes : TreeFamNUDT5
Homologs : HomoloGeneNUDT5
Homology/Alignments : Family Browser (UCSC)NUDT5
Gene fusions - Rearrangements
Fusion : QuiverNUDT5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUDT5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUDT5
dbVarNUDT5
ClinVarNUDT5
MonarchNUDT5
1000_GenomesNUDT5 
Exome Variant ServerNUDT5
GNOMAD BrowserENSG00000165609
Varsome BrowserNUDT5
ACMGNUDT5 variants
VarityQ9UKK9
Genomic Variants (DGV)NUDT5 [DGVbeta]
DECIPHERNUDT5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUDT5 
Mutations
ICGC Data PortalNUDT5 
TCGA Data PortalNUDT5 
Broad Tumor PortalNUDT5
OASIS PortalNUDT5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUDT5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNUDT5
Mutations and Diseases : HGMDNUDT5
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaNUDT5
DgiDB (Drug Gene Interaction Database)NUDT5
DoCM (Curated mutations)NUDT5
CIViC (Clinical Interpretations of Variants in Cancer)NUDT5
Cancer3DNUDT5
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609230   
Orphanet
DisGeNETNUDT5
MedgenNUDT5
Genetic Testing Registry NUDT5
NextProtQ9UKK9 [Medical]
GENETestsNUDT5
Target ValidationNUDT5
Huge Navigator NUDT5 [HugePedia]
ClinGenNUDT5
Clinical trials, drugs, therapy
MyCancerGenomeNUDT5
Protein Interactions : CTDNUDT5
Pharm GKB GenePA31838
PharosQ9UKK9
Clinical trialNUDT5
Miscellaneous
canSAR (ICR)NUDT5
HarmonizomeNUDT5
DataMed IndexNUDT5
Probes
Litterature
PubMed51 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNUDT5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:23:30 CEST 2021

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