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NUDT5 (nudix (nucleoside diphosphate linked moiety X)-type motif 5)

Identity

Alias_namesnudix (nucleoside diphosphate linked moiety X)-type motif 5
Alias_symbol (synonym)hYSAH1
YSA1H
Other aliasYSA1
YSAH1
HGNC (Hugo) NUDT5
LocusID (NCBI) 11164
Atlas_Id 71031
Location 10p13  [Link to chromosome band 10p13]
Location_base_pair Starts at 12209573 and ends at 12238143 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NUDT5 (10p13) / WDR90 (16p13.3)NUDT5 (10p13) / ZMYND11 (10p15.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUDT5   8052
Cards
Entrez_Gene (NCBI)NUDT5  11164  nudix (nucleoside diphosphate linked moiety X)-type motif 5
AliasesYSA1; YSA1H; YSAH1; hYSAH1
GeneCards (Weizmann)NUDT5
Ensembl hg19 (Hinxton)ENSG00000165609 [Gene_View]  chr10:12209573-12238143 [Contig_View]  NUDT5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000165609 [Gene_View]  chr10:12209573-12238143 [Contig_View]  NUDT5 [Vega]
ICGC DataPortalENSG00000165609
TCGA cBioPortalNUDT5
AceView (NCBI)NUDT5
Genatlas (Paris)NUDT5
WikiGenes11164
SOURCE (Princeton)NUDT5
Genetics Home Reference (NIH)NUDT5
Genomic and cartography
GoldenPath hg19 (UCSC)NUDT5  -     chr10:12209573-12238143 -  10p13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NUDT5  -     10p13   [Description]    (hg38-Dec_2013)
EnsemblNUDT5 - 10p13 [CytoView hg19]  NUDT5 - 10p13 [CytoView hg38]
Mapping of homologs : NCBINUDT5 [Mapview hg19]  NUDT5 [Mapview hg38]
OMIM609230   
Gene and transcription
Genbank (Entrez)AF155832 AF161464 AF218818 AK123731 AK291131
RefSeq transcript (Entrez)NM_014142
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_008705 NW_004929370
Consensus coding sequences : CCDS (NCBI)NUDT5
Cluster EST : UnigeneHs.656304 [ NCBI ]
CGAP (NCI)Hs.656304
Alternative Splicing GalleryENSG00000165609
Gene ExpressionNUDT5 [ NCBI-GEO ]   NUDT5 [ EBI - ARRAY_EXPRESS ]   NUDT5 [ SEEK ]   NUDT5 [ MEM ]
Gene Expression Viewer (FireBrowse)NUDT5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11164
GTEX Portal (Tissue expression)NUDT5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKK9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKK9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKK9
Splice isoforms : SwissVarQ9UKK9
Catalytic activity : Enzyme3.6.1.13 [ Enzyme-Expasy ]   3.6.1.133.6.1.13 [ IntEnz-EBI ]   3.6.1.13 [ BRENDA ]   3.6.1.13 [ KEGG ]   
PhosPhoSitePlusQ9UKK9
Domaine pattern : Prosite (Expaxy)NUDIX (PS51462)    NUDIX_BOX (PS00893)   
Domains : Interpro (EBI)Nudix_hydrolase    NUDIX_hydrolase_CS    NUDIX_hydrolase_dom    NUDIX_hydrolase_dom-like   
Domain families : Pfam (Sanger)NUDIX (PF00293)   
Domain families : Pfam (NCBI)pfam00293   
Conserved Domain (NCBI)NUDT5
DMDM Disease mutations11164
Blocks (Seattle)NUDT5
PDB (SRS)2DSB    2DSC    2DSD    3AC9    3ACA    3BM4    3L85   
PDB (PDBSum)2DSB    2DSC    2DSD    3AC9    3ACA    3BM4    3L85   
PDB (IMB)2DSB    2DSC    2DSD    3AC9    3ACA    3BM4    3L85   
PDB (RSDB)2DSB    2DSC    2DSD    3AC9    3ACA    3BM4    3L85   
Structural Biology KnowledgeBase2DSB    2DSC    2DSD    3AC9    3ACA    3BM4    3L85   
SCOP (Structural Classification of Proteins)2DSB    2DSC    2DSD    3AC9    3ACA    3BM4    3L85   
CATH (Classification of proteins structures)2DSB    2DSC    2DSD    3AC9    3ACA    3BM4    3L85   
SuperfamilyQ9UKK9
Human Protein AtlasENSG00000165609
Peptide AtlasQ9UKK9
HPRD14851
IPIIPI00296913   IPI00644292   IPI00646762   IPI00641064   IPI00647797   IPI00646261   IPI00984011   
Protein Interaction databases
DIP (DOE-UCLA)Q9UKK9
IntAct (EBI)Q9UKK9
FunCoupENSG00000165609
BioGRIDNUDT5
STRING (EMBL)NUDT5
ZODIACNUDT5
Ontologies - Pathways
QuickGOQ9UKK9
Ontology : AmiGOmagnesium ion binding  intracellular  nucleus  cytosol  nucleotide metabolic process  ribonucleoside diphosphate catabolic process  nucleoside-diphosphatase activity  ADP-sugar diphosphatase activity  D-ribose catabolic process  snoRNA binding  nucleobase-containing small molecule catabolic process  small molecule metabolic process  ADP-ribose diphosphatase activity  m7G(5')pppN diphosphatase activity  nucleobase-containing small molecule metabolic process  extracellular exosome  
Ontology : EGO-EBImagnesium ion binding  intracellular  nucleus  cytosol  nucleotide metabolic process  ribonucleoside diphosphate catabolic process  nucleoside-diphosphatase activity  ADP-sugar diphosphatase activity  D-ribose catabolic process  snoRNA binding  nucleobase-containing small molecule catabolic process  small molecule metabolic process  ADP-ribose diphosphatase activity  m7G(5')pppN diphosphatase activity  nucleobase-containing small molecule metabolic process  extracellular exosome  
Pathways : KEGGPurine metabolism   
NDEx NetworkNUDT5
Atlas of Cancer Signalling NetworkNUDT5
Wikipedia pathwaysNUDT5
Orthology - Evolution
OrthoDB11164
GeneTree (enSembl)ENSG00000165609
Phylogenetic Trees/Animal Genes : TreeFamNUDT5
HOVERGENQ9UKK9
HOGENOMQ9UKK9
Homologs : HomoloGeneNUDT5
Homology/Alignments : Family Browser (UCSC)NUDT5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUDT5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUDT5
dbVarNUDT5
ClinVarNUDT5
1000_GenomesNUDT5 
Exome Variant ServerNUDT5
ExAC (Exome Aggregation Consortium)NUDT5 (select the gene name)
Genetic variants : HAPMAP11164
Genomic Variants (DGV)NUDT5 [DGVbeta]
DECIPHER (Syndromes)10:12209573-12238143  ENSG00000165609
CONAN: Copy Number AnalysisNUDT5 
Mutations
ICGC Data PortalNUDT5 
TCGA Data PortalNUDT5 
Broad Tumor PortalNUDT5
OASIS PortalNUDT5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUDT5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUDT5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUDT5
DgiDB (Drug Gene Interaction Database)NUDT5
DoCM (Curated mutations)NUDT5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUDT5 (select a term)
intoGenNUDT5
Cancer3DNUDT5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609230   
Orphanet
MedgenNUDT5
Genetic Testing Registry NUDT5
NextProtQ9UKK9 [Medical]
TSGene11164
GENETestsNUDT5
Huge Navigator NUDT5 [HugePedia]
snp3D : Map Gene to Disease11164
BioCentury BCIQNUDT5
ClinGenNUDT5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11164
Chemical/Pharm GKB GenePA31838
Clinical trialNUDT5
Miscellaneous
canSAR (ICR)NUDT5 (select the gene name)
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUDT5
EVEXNUDT5
GoPubMedNUDT5
iHOPNUDT5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:35:34 CET 2017

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