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NUDT7 (nudix hydrolase 7)

Identity

Alias_namesnudix (nucleoside diphosphate linked moiety X)-type motif 7
Other alias-
HGNC (Hugo) NUDT7
LocusID (NCBI) 283927
Atlas_Id 71032
Location 16q23.1  [Link to chromosome band 16q23]
Location_base_pair Starts at 77722492 and ends at 77742260 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FHDC1 (4q31.3) / NUDT7 (16q23.1)NUDT7 (16q23.1) / SAFB (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NUDT7   8054
Cards
Entrez_Gene (NCBI)NUDT7  283927  nudix hydrolase 7
Aliases
GeneCards (Weizmann)NUDT7
Ensembl hg19 (Hinxton)ENSG00000140876 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140876 [Gene_View]  chr16:77722492-77742260 [Contig_View]  NUDT7 [Vega]
ICGC DataPortalENSG00000140876
TCGA cBioPortalNUDT7
AceView (NCBI)NUDT7
Genatlas (Paris)NUDT7
WikiGenes283927
SOURCE (Princeton)NUDT7
Genetics Home Reference (NIH)NUDT7
Genomic and cartography
GoldenPath hg38 (UCSC)NUDT7  -     chr16:77722492-77742260 +  16q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUDT7  -     16q23.1   [Description]    (hg19-Feb_2009)
EnsemblNUDT7 - 16q23.1 [CytoView hg19]  NUDT7 - 16q23.1 [CytoView hg38]
Mapping of homologs : NCBINUDT7 [Mapview hg19]  NUDT7 [Mapview hg38]
OMIM609231   
Gene and transcription
Genbank (Entrez)AA227330 AA579048 AI927964 AK296963 BC172303
RefSeq transcript (Entrez)NM_001105663 NM_001243657 NM_001243660 NM_001243661
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NUDT7
Cluster EST : UnigeneHs.282665 [ NCBI ]
CGAP (NCI)Hs.282665
Alternative Splicing GalleryENSG00000140876
Gene ExpressionNUDT7 [ NCBI-GEO ]   NUDT7 [ EBI - ARRAY_EXPRESS ]   NUDT7 [ SEEK ]   NUDT7 [ MEM ]
Gene Expression Viewer (FireBrowse)NUDT7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283927
GTEX Portal (Tissue expression)NUDT7
Human Protein AtlasENSG00000140876-NUDT7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C024   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C024  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C024
Splice isoforms : SwissVarP0C024
Catalytic activity : Enzyme3.6.1.- [ Enzyme-Expasy ]   3.6.1.-3.6.1.- [ IntEnz-EBI ]   3.6.1.- [ BRENDA ]   3.6.1.- [ KEGG ]   
PhosPhoSitePlusP0C024
Domaine pattern : Prosite (Expaxy)NUDIX (PS51462)    NUDIX_COA (PS01293)   
Domains : Interpro (EBI)NUDIX_hydrolase_dom    NUDIX_hydrolase_dom-like    NUDIX_hydrolase_NudL_CS   
Domain families : Pfam (Sanger)NUDIX (PF00293)   
Domain families : Pfam (NCBI)pfam00293   
Conserved Domain (NCBI)NUDT7
DMDM Disease mutations283927
Blocks (Seattle)NUDT7
SuperfamilyP0C024
Human Protein Atlas [tissue]ENSG00000140876-NUDT7 [tissue]
Peptide AtlasP0C024
IPIIPI00455303   IPI00909180   
Protein Interaction databases
DIP (DOE-UCLA)P0C024
IntAct (EBI)P0C024
FunCoupENSG00000140876
BioGRIDNUDT7
STRING (EMBL)NUDT7
ZODIACNUDT7
Ontologies - Pathways
QuickGOP0C024
Ontology : AmiGOmagnesium ion binding  molecular_function  acetyl-CoA hydrolase activity  receptor binding  peroxisome  peroxisomal matrix  biological_process  nucleoside diphosphate metabolic process  coenzyme A catabolic process  CoA hydrolase activity  manganese ion binding  snoRNA binding  cellular lipid metabolic process  acetyl-CoA catabolic process  m7G(5')pppN diphosphatase activity  brown fat cell differentiation  
Ontology : EGO-EBImagnesium ion binding  molecular_function  acetyl-CoA hydrolase activity  receptor binding  peroxisome  peroxisomal matrix  biological_process  nucleoside diphosphate metabolic process  coenzyme A catabolic process  CoA hydrolase activity  manganese ion binding  snoRNA binding  cellular lipid metabolic process  acetyl-CoA catabolic process  m7G(5')pppN diphosphatase activity  brown fat cell differentiation  
Pathways : KEGGPeroxisome   
NDEx NetworkNUDT7
Atlas of Cancer Signalling NetworkNUDT7
Wikipedia pathwaysNUDT7
Orthology - Evolution
OrthoDB283927
GeneTree (enSembl)ENSG00000140876
Phylogenetic Trees/Animal Genes : TreeFamNUDT7
HOVERGENP0C024
HOGENOMP0C024
Homologs : HomoloGeneNUDT7
Homology/Alignments : Family Browser (UCSC)NUDT7
Gene fusions - Rearrangements
Tumor Fusion PortalNUDT7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUDT7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUDT7
dbVarNUDT7
ClinVarNUDT7
1000_GenomesNUDT7 
Exome Variant ServerNUDT7
ExAC (Exome Aggregation Consortium)ENSG00000140876
GNOMAD BrowserENSG00000140876
Genetic variants : HAPMAP283927
Genomic Variants (DGV)NUDT7 [DGVbeta]
DECIPHERNUDT7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUDT7 
Mutations
ICGC Data PortalNUDT7 
TCGA Data PortalNUDT7 
Broad Tumor PortalNUDT7
OASIS PortalNUDT7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUDT7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUDT7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NUDT7
DgiDB (Drug Gene Interaction Database)NUDT7
DoCM (Curated mutations)NUDT7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUDT7 (select a term)
intoGenNUDT7
Cancer3DNUDT7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609231   
Orphanet
DisGeNETNUDT7
MedgenNUDT7
Genetic Testing Registry NUDT7
NextProtP0C024 [Medical]
TSGene283927
GENETestsNUDT7
Target ValidationNUDT7
Huge Navigator NUDT7 [HugePedia]
snp3D : Map Gene to Disease283927
BioCentury BCIQNUDT7
ClinGenNUDT7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283927
Chemical/Pharm GKB GenePA31840
Clinical trialNUDT7
Miscellaneous
canSAR (ICR)NUDT7 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUDT7
EVEXNUDT7
GoPubMedNUDT7
iHOPNUDT7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:34:05 CET 2017

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