Atlas of Genetics and Cytogenetics in Oncology and Haematology

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NUDT8 (nudix hydrolase 8)

Identity

Alias_namesnudix (nucleoside diphosphate linked moiety X)-type motif 8
Alias_symbol (synonym)FLJ41567
Other alias-
HGNC (Hugo) NUDT8
LocusID (NCBI) 254552
Atlas_Id 71033
Location 11q13.2  [Link to chromosome band 11q13]
Location_base_pair Starts at 67627939 and ends at 67629937 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
B4GALT1 (9p21.1) / NUDT8 (11q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)NUDT8   8055
Cards
Entrez_Gene (NCBI)NUDT8  254552  nudix hydrolase 8
Aliases
GeneCards (Weizmann)NUDT8
Ensembl hg19 (Hinxton)ENSG00000167799 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167799 [Gene_View]  ENSG00000167799 [Sequence]  chr11:67627939-67629937 [Contig_View]  NUDT8 [Vega]
ICGC DataPortalENSG00000167799
TCGA cBioPortalNUDT8
AceView (NCBI)NUDT8
Genatlas (Paris)NUDT8
WikiGenes254552
SOURCE (Princeton)NUDT8
Genetics Home Reference (NIH)NUDT8
Genomic and cartography
GoldenPath hg38 (UCSC)NUDT8  -     chr11:67627939-67629937 -  11q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NUDT8  -     11q13.2   [Description]    (hg19-Feb_2009)
GoldenPathNUDT8 - 11q13.2 [CytoView hg19]  NUDT8 - 11q13.2 [CytoView hg38]
ImmunoBaseENSG00000167799
Mapping of homologs : NCBINUDT8 [Mapview hg19]  NUDT8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123561 BC018644 CB140633
RefSeq transcript (Entrez)NM_001243750 NM_181843
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NUDT8
Cluster EST : UnigeneHs.433329 [ NCBI ]
CGAP (NCI)Hs.433329
Alternative Splicing GalleryENSG00000167799
Gene ExpressionNUDT8 [ NCBI-GEO ]   NUDT8 [ EBI - ARRAY_EXPRESS ]   NUDT8 [ SEEK ]   NUDT8 [ MEM ]
Gene Expression Viewer (FireBrowse)NUDT8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)254552
GTEX Portal (Tissue expression)NUDT8
Human Protein AtlasENSG00000167799-NUDT8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WV74   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WV74  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WV74
Splice isoforms : SwissVarQ8WV74
PhosPhoSitePlusQ8WV74
Domaine pattern : Prosite (Expaxy)NUDIX (PS51462)   
Domains : Interpro (EBI)NUDIX_hydrolase_dom    NUDIX_hydrolase_dom-like   
Domain families : Pfam (Sanger)NUDIX (PF00293)   
Domain families : Pfam (NCBI)pfam00293   
Conserved Domain (NCBI)NUDT8
DMDM Disease mutations254552
Blocks (Seattle)NUDT8
SuperfamilyQ8WV74
Human Protein Atlas [tissue]ENSG00000167799-NUDT8 [tissue]
Peptide AtlasQ8WV74
HPRD17652
IPIIPI00291313   IPI00607555   
Protein Interaction databases
DIP (DOE-UCLA)Q8WV74
IntAct (EBI)Q8WV74
FunCoupENSG00000167799
BioGRIDNUDT8
STRING (EMBL)NUDT8
ZODIACNUDT8
Ontologies - Pathways
QuickGOQ8WV74
Ontology : AmiGOhydrolase activity  metal ion binding  
Ontology : EGO-EBIhydrolase activity  metal ion binding  
Pathways : KEGGStarch and sucrose metabolism    Folate biosynthesis   
NDEx NetworkNUDT8
Atlas of Cancer Signalling NetworkNUDT8
Wikipedia pathwaysNUDT8
Orthology - Evolution
OrthoDB254552
GeneTree (enSembl)ENSG00000167799
Phylogenetic Trees/Animal Genes : TreeFamNUDT8
HOGENOMQ8WV74
Homologs : HomoloGeneNUDT8
Homology/Alignments : Family Browser (UCSC)NUDT8
Gene fusions - Rearrangements
Fusion : QuiverNUDT8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNUDT8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NUDT8
dbVarNUDT8
ClinVarNUDT8
1000_GenomesNUDT8 
Exome Variant ServerNUDT8
ExAC (Exome Aggregation Consortium)ENSG00000167799
GNOMAD BrowserENSG00000167799
Varsome BrowserNUDT8
Genetic variants : HAPMAP254552
Genomic Variants (DGV)NUDT8 [DGVbeta]
DECIPHERNUDT8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNUDT8 
Mutations
ICGC Data PortalNUDT8 
TCGA Data PortalNUDT8 
Broad Tumor PortalNUDT8
OASIS PortalNUDT8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNUDT8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNUDT8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch NUDT8
DgiDB (Drug Gene Interaction Database)NUDT8
DoCM (Curated mutations)NUDT8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NUDT8 (select a term)
intoGenNUDT8
Cancer3DNUDT8(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETNUDT8
MedgenNUDT8
Genetic Testing Registry NUDT8
NextProtQ8WV74 [Medical]
TSGene254552
GENETestsNUDT8
Target ValidationNUDT8
Huge Navigator NUDT8 [HugePedia]
snp3D : Map Gene to Disease254552
BioCentury BCIQNUDT8
ClinGenNUDT8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD254552
Chemical/Pharm GKB GenePA31841
Clinical trialNUDT8
Miscellaneous
canSAR (ICR)NUDT8 (select the gene name)
DataMed IndexNUDT8
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNUDT8
EVEXNUDT8
GoPubMedNUDT8
iHOPNUDT8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jun 7 17:40:53 CEST 2019
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